Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20180
         (477 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   4.4  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   5.8  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   5.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 271 VDEAPECLGNGTLSSS 224
           VD   +C+G GT+ S+
Sbjct: 650 VDHIRQCVGGGTIGSN 665


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 415 QRNDPCAGRRREKTFTS 465
           QR  P AG+R    +TS
Sbjct: 81  QRTKPTAGKRARTAYTS 97


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 415 QRNDPCAGRRREKTFTS 465
           QR  P AG+R    +TS
Sbjct: 72  QRTKPTAGKRARTAYTS 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,811
Number of Sequences: 336
Number of extensions: 2312
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)