Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20180
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    27   1.1  
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    25   5.9  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   5.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.9  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   7.9  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   7.9  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    25   7.9  

>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +3

Query: 174 TNLQSADYDAVILILYPEELNVPLPRHSGASSTESGNLTSTS 299
           + L++  + ++   L+ EEL  P+PR+S  SST S   TSTS
Sbjct: 99  SKLENVSFISLDQELWDEELFEPMPRNSSPSSTFS---TSTS 137


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 107 VVNARFGDIELQANTRRDGSCGAETRNRKPRSVYL 3
           ++ A+  +I+ Q   R  G  G+E RNR  RS+Y+
Sbjct: 155 LIIAKAKEIDAQVLARAAGKTGSEYRNRM-RSLYM 188


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 341  GRIILAPTGKITPYHDARVVKEAAYKGMTRAL 436
            GR+ ++P  +I+P H AR+ K       ++ L
Sbjct: 1100 GRVYMSPLTEISPEHLARLAKNTTLLSYSKPL 1131


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 255 SGASSTESGNLTSTSTSRRRCGNATTY 335
           S +SST S  LTS+S+S  R  +++++
Sbjct: 373 SSSSSTSSSTLTSSSSSSSRPASSSSH 399


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 236  RAIAETFGSFVDGIGKLDKHIHKSATVWQCDYV 334
            R + E  G ++   GK+DKH    A  W   Y+
Sbjct: 1142 RHLKEFKGPYLASNGKVDKHGKAEAIEWLSKYI 1174


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 90  EAGVHNVINDRPKMPFVEYKLYENI---FIETNLQSADYDAVI 209
           E  + ++IND PK+   + K YE +     ET++  A++  V+
Sbjct: 502 EQEISSIINDLPKISTTKRKDYEELPEEVSETSINIAEHTPVL 544


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 234 NVPLPRHSGASSTESGNLTSTSTSRRRCGNAT 329
           N+  P      S++   LT  +TSRRRC + T
Sbjct: 123 NLTNPPLESEKSSDKALLTRPATSRRRCCHPT 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,922
Number of Sequences: 5004
Number of extensions: 39002
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)