Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20180
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1167 + 28111923-28113218                                         31   0.64 
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    31   0.64 
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161...    29   1.9  
06_03_0854 + 25400855-25403741,25406174-25407708                       28   4.5  
06_03_0545 + 21983666-21986086                                         28   4.5  
05_04_0042 + 17439952-17440226,17441196-17441287,17441367-174414...    27   5.9  
03_01_0089 + 714803-715089,715941-716085,717171-717292,717660-71...    27   5.9  
11_01_0196 - 1547373-1549859                                           27   7.8  

>06_03_1167 + 28111923-28113218
          Length = 431

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 258 GASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSL 377
           GASS++SG+  + +T++R  G++   +    Y   PG SL
Sbjct: 288 GASSSQSGSAAAAATAKRMAGSSKMRVIPSRYSLTPGASL 327


>03_01_0300 +
           2350232-2352274,2352349-2352669,2352752-2352838,
           2353031-2353708,2353800-2353964,2354139-2354433,
           2354581-2354795,2354885-2355190,2355269-2355332,
           2355426-2355665,2355783-2355886
          Length = 1505

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 368 KITPYHDARVVKEAAYKGMTRALDAGAKRPL 460
           ++TPY DA +V  A    ++  L  GA+RPL
Sbjct: 227 RVTPYGDAGIVSLATLSWLSPLLSVGAQRPL 257


>04_03_1049 +
           22015053-22015083,22015770-22015885,22016013-22016108,
           22016229-22016285,22016468-22016620,22016754-22016838,
           22017097-22017187,22017324-22017488,22017813-22017932,
           22018020-22018104,22018234-22018402,22019055-22019173,
           22019250-22019440,22019746-22019957,22020905-22021500,
           22022538-22022658,22023439-22023868,22024412-22024797,
           22024976-22025071,22025380-22025432,22026915-22027061,
           22027139-22027309,22027880-22027962,22028049-22028247,
           22028668-22028789,22029752-22029818,22029960-22030010,
           22030768-22031001,22031263-22031451,22032455-22032646,
           22032742-22032936
          Length = 1673

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = +3

Query: 240 PLPRHSGASST-----ESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSLLTTTLGW*R 404
           P  R +G+S        S +L + +      G     L+ G +W R GR   T  LGW  
Sbjct: 679 PATRRTGSSGVGFFHASSSSLIAGANGGSDGGGGARTLSWGTWWRRLGRLAPTVALGWCG 738

Query: 405 KQRTKE 422
           +  T+E
Sbjct: 739 RWSTRE 744


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 447 APASSARVIPLYAASFTTLASW*GVIFPVGANIILPPDT*SHCHTVA 307
           APA S+ + P+ AAS +  A++     P  A +I PP   +   T A
Sbjct: 507 APAPSSVISPVLAASASAAAAFAPAPAPAAAEVIPPPPLPAAASTAA 553


>06_03_0545 + 21983666-21986086
          Length = 806

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 116 VDYVVNARFGDIELQANTRRDGSCGAETRNRKP 18
           +D  +N RF D++ +A  +   SC  E R R+P
Sbjct: 755 IDTRLNGRFNDLQARAMMKLAVSCLEEDRGRRP 787


>05_04_0042 +
           17439952-17440226,17441196-17441287,17441367-17441414,
           17442522-17442919,17443298-17443633
          Length = 382

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +3

Query: 156 ENIFIETNLQSADYDAVILILYP-EELNVPLPRHSGASSTESGNLTSTSTSRRRCGNATT 332
           E++ I+       Y    +I +P + L V + R SGA S +     + S  +     ATT
Sbjct: 274 EDVLIDNQAAEEGYQNFEVISHPCKRLRVSVKRESGAHSEDESVAPTVSVKKEAQEEATT 333

Query: 333 YLAAGLYWPRPG 368
                  + +PG
Sbjct: 334 SFGLQAAFFKPG 345


>03_01_0089 +
           714803-715089,715941-716085,717171-717292,717660-717918
          Length = 270

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 18  RLSVSRFGPAAPISTRVSL*FDVTEAGVHNVINDRPKMP 134
           RL++SRFGP  P+S   +   D +  G  + +  +P  P
Sbjct: 29  RLNLSRFGPVRPVSAAAAA-ADKSRGGGGSAMEAQPSYP 66


>11_01_0196 - 1547373-1549859
          Length = 828

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 140 DERHFWTIVDYVVNARFGDIELQANTRRDGSCGAETRNRKP 18
           +ER    +VDY +N  F  ++++       SC  E R+++P
Sbjct: 774 EERSIEDLVDYRLNGDFNHVQVKLMLEIAVSCLEEDRSKRP 814


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,438,244
Number of Sequences: 37544
Number of extensions: 285433
Number of successful extensions: 820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)