Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20180
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.039
SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)                   29   2.0  
SB_59367| Best HMM Match : VWA (HMM E-Value=0)                         28   3.4  
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)                     28   3.4  
SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)                 27   6.0  
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)                   27   6.0  
SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)                      27   6.0  

>SB_49817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 81  DVTEAGVHNVINDRPKMPFVEYKLYENIFIETNLQSADYDAVILILYPEELNVPLPRHSG 260
           DV    V   I  +P    + + + + +    N    D D V+++LYP E+   L RH G
Sbjct: 430 DVVYKEVEASILHQPTPTILHFSIVKPLTRAANADKRDIDKVLVLLYPREIEEMLERHDG 489

Query: 261 AS 266
            +
Sbjct: 490 VT 491


>SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)
          Length = 897

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +3

Query: 15  PRLSVSRFGPAAPISTRVSL*FD-----VTEAGVHNVINDRPKMPF 137
           P L+V R GP   +S  + +  D     V EAG+  V+ D+ KMPF
Sbjct: 795 PILTVDRSGPYDGLSMVIDVKQDQYNPFVDEAGIRVVLTDQQKMPF 840


>SB_59367| Best HMM Match : VWA (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 16  RGFRFRVSAPQLPSLRVLACNSMSPKRAFTT*STIV 123
           +GF+F   A  +PSLRV+  N  +    F   STI+
Sbjct: 180 QGFKFMCDAFMMPSLRVIKTNPNTKFNGFVIDSTIL 215


>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
          Length = 1481

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 117  DRPKMPFVEYKLYENIFIETNLQSADYDAVILILYPEELNVPLPRHS 257
            DR  MP     +YEN+ +++N  S       L++ P EL +P P HS
Sbjct: 1223 DRGSMP--SEPIYENVSMKSNTLSG------LVIRPSELPLPSPTHS 1261


>SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)
          Length = 170

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 403 GSSVQRNDPCAGRRREKTFTSRSKR 477
           GS+   ND C   RREK+  +R KR
Sbjct: 27  GSNADENDICEPERREKSEETRRKR 51


>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 280 PDSVDEAPECLGNGTLSSSG*RIKIT 203
           P+ VDE+PE L N   +S G R+++T
Sbjct: 892 PEQVDESPEKLRNVEQASEGTRMQVT 917


>SB_41161| Best HMM Match : TSP_1 (HMM E-Value=6e-22)
          Length = 649

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 294 TSTSRRRCGNATTYLAAGLYWPRPGRSLLTTTLGW 398
           T+T + R GNA  Y+   L    PG  LL T  G+
Sbjct: 568 TATYQARAGNAKVYVDGELKARGPGNGLLDTDWGY 602


>SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)
          Length = 653

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 415 VRCFLHHPSVVVRSDLPGRGQYNPAARYV 329
           +R  L  PSV +R+ L   G Y+   RYV
Sbjct: 447 IRALLQSPSVCIRALLQSLGTYSSITRYV 475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,097
Number of Sequences: 59808
Number of extensions: 304313
Number of successful extensions: 776
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)