Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20180
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical pr...    45   3e-05
U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase ...    30   0.99 
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z66495-1|CAA91268.2|  502|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical
           protein W07G4.4 protein.
          Length = 522

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +2

Query: 266 VDGIGKLDKHIHKSATVWQCD--YVSGGRIILAPTGKIT-PYHDARVVKEAAYKGMTRAL 436
           V+   KL      S ++ Q D   V  GR+IL+ TG ++  Y D R  + AA KG++ AL
Sbjct: 50  VNNFLKLHSGAFNSTSLVQVDSSVVPSGRLILSGTGNVSRDYDDVRRYQAAARKGISMAL 109

Query: 437 DAGAKRPLLV 466
            AG K PLL+
Sbjct: 110 SAGVKSPLLI 119


>U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase C
           protein.
          Length = 707

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = -3

Query: 430 TGHSFVRCFLHHPSVVV--RSDLPGRGQYNPAARYVVALPHRRRLVDVLVKFPDSVDEAP 257
           TGH F+  FL H +     +  + G G+     +    + H+R   DV+ K P +  +A 
Sbjct: 169 TGHKFMALFLRHATFCAHCKEFIWGIGKQGYQCQICTVVVHKRCHEDVVWKCPGNKADAV 228

Query: 256 ECLGNGTLSSSG*RIKI 206
           E LG     +   R  I
Sbjct: 229 EELGKEIQETGAGRFNI 245


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical protein
            F44G4.8 protein.
          Length = 1367

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 22/61 (36%), Positives = 28/61 (45%)
 Frame = +3

Query: 261  ASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSLLTTTLGW*RKQRTKE*PVRWT 440
            +S+T S + TSTST+   CG+     A      R  RSL   T    R +R    PV  T
Sbjct: 976  SSTTSSNSPTSTSTTMTDCGSNPHLGAPNAGGHRRTRSLRERTGVEHRLERLSSGPVHRT 1035

Query: 441  P 443
            P
Sbjct: 1036 P 1036


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical protein
            F44G4.8 protein.
          Length = 1367

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 22/61 (36%), Positives = 28/61 (45%)
 Frame = +3

Query: 261  ASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSLLTTTLGW*RKQRTKE*PVRWT 440
            +S+T S + TSTST+   CG+     A      R  RSL   T    R +R    PV  T
Sbjct: 976  SSTTSSNSPTSTSTTMTDCGSNPHLGAPNAGGHRRTRSLRERTGVEHRLERLSSGPVHRT 1035

Query: 441  P 443
            P
Sbjct: 1036 P 1036


>Z66495-1|CAA91268.2|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.1 protein.
          Length = 502

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 379 RSDLPGRGQYNPAARYVVALPH 314
           R D+  RGQ+ P    VV LPH
Sbjct: 384 REDITIRGQFYPKGAIVVCLPH 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,889,847
Number of Sequences: 27780
Number of extensions: 222966
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)