Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20180
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 92  FGDIELQANTRRDGSCGAET 33
           FG+I L  N RR  S  AET
Sbjct: 520 FGEICLLTNARRVASVRAET 539


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 92  FGDIELQANTRRDGSCGAET 33
           FG+I L  N RR  S  AET
Sbjct: 488 FGEICLLTNARRVASVRAET 507


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 135 FVEYKLYENIFIETNLQSADYDAVILILYPEELNVPLPRHSGAS 266
           F+E +    + +    QS + + ++L + PE + V + +  GAS
Sbjct: 213 FLETRQSLEVQLVIEEQSTEQERLLLSVLPEHVAVKMRQDLGAS 256


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 37  SAPQLPSLRVLACNSMSPKRAFTT*STIVQKCRSSN 144
           S+P+  S    +  S SP+ A +T +T+V     SN
Sbjct: 825 SSPRYLSAAATSSTSTSPRPASSTAATLVLSGCPSN 860


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,516
Number of Sequences: 438
Number of extensions: 2798
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)