Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20180
(477 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49890.1 68414.m05593 expressed protein contains Pfam domain,... 30 0.70
At4g02720.1 68417.m00368 expressed protein temporary automated f... 29 1.6
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 29 2.2
At3g30210.1 68416.m03811 myb family transcription factor (MYB121... 28 3.8
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 28 3.8
At5g57010.1 68418.m07115 calmodulin-binding family protein conta... 27 5.0
At2g01820.1 68415.m00113 leucine-rich repeat protein kinase, put... 27 5.0
At4g26930.1 68417.m03875 myb family transcription factor (MYB97)... 27 6.6
At1g47940.1 68414.m05339 hypothetical protein 27 6.6
At3g01750.1 68416.m00112 ankyrin repeat family protein contains ... 27 8.7
>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 659
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 222 PEELNVPLPRHSGASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSLLTTT 389
P P P HS +S+T + T+T+TS +++ L +P P L +T
Sbjct: 37 PSRYLSPSPSHSVSSTTTTTTTTTTTTSSSSSSSSSAILRTSKRYPSPSPLLSRST 92
>At4g02720.1 68417.m00368 expressed protein temporary automated
functional assignment
Length = 422
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 343 QDYIGPDREDHSLPRR*GGEGSSVQRNDPCAGRRREKTFTSRSKR 477
QD G +R+D+S + G+ S +D R+R K+ +SRSKR
Sbjct: 82 QDKNGGERDDNSKGKERKGKSDSESESDGLRSRKR-KSKSSRSKR 125
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 283 FPDSVDEAPECLGNGTLSS 227
FPD ++PECL GT SS
Sbjct: 20 FPDGKSQSPECLSQGTPSS 38
>At3g30210.1 68416.m03811 myb family transcription factor (MYB121)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain (2 copies)
Length = 276
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 298 DVLVKFPDSVDEAPECLGNGTLSSSG 221
D+ KFPDS EAP C G+G S +G
Sbjct: 244 DIDEKFPDSGIEAPSC-GSGDYSYTG 268
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 368 KITPYHDARVVKEAAYKGMTRALDAGAKRPL 460
K+TPY A +V + L AG+KRPL
Sbjct: 226 KVTPYSTAGLVSLITLSWLDPLLSAGSKRPL 256
>At5g57010.1 68418.m07115 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 495
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 92 FGDIELQANTRRDGSCGAETR 30
F D+ Q N RDG+CG +TR
Sbjct: 41 FKDLVDQRNNYRDGNCGVKTR 61
>At2g01820.1 68415.m00113 leucine-rich repeat protein kinase,
putative similar to protein kinase TMK1
gi|166888|gb|AAA32876; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 943
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 168 IETNLQSADYDAVILILYPEELNVPLPRHSGASSTESGNL 287
+ TNLQS + VIL L+ ++ P+P SG S ++ NL
Sbjct: 81 LPTNLQSLS-ELVILELFLNRISGPIPDLSGLSRLQTLNL 119
>At4g26930.1 68417.m03875 myb family transcription factor (MYB97)
contains Pfam profile: PF00249 myb-like DNA-binding
domain ;similar to anther-specific myb-related protein 2
GI:11066263 from [Nicotiana tabacum]
Length = 389
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 216 LYPEELNVPLPRHSGASSTESGNLTSTSTSRRRCGNATTYLAAGLYWPRPGRSLLTT 386
+YP++ + PLP + ASS L S +RC N T + Y P L+++
Sbjct: 143 MYPQQPSSPLPSQTPASSFTFPLLQPPSLCPKRCYN-TAFSPKASYISSPTNFLVSS 198
>At1g47940.1 68414.m05339 hypothetical protein
Length = 280
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 222 PEELNVPLPRHSGASSTESGNLTSTS 299
P LN+P P ++ ASS++S +TS +
Sbjct: 57 PSPLNIPPPLNNDASSSKSPTITSVT 82
>At3g01750.1 68416.m00112 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 664
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Frame = +3
Query: 222 PEELNVPLPRHSGASS--TESG--NLTSTSTSRRRCGNA-----TTYLAAGLYWPR 362
PE++ V +PRH +SS E G N+ + ++C NA T L + +WPR
Sbjct: 452 PEKIGVVVPRHVRSSSCCIEIGQLNVMDENHHLKKCRNASVNSTTERLKSVFHWPR 507
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,368,181
Number of Sequences: 28952
Number of extensions: 210350
Number of successful extensions: 518
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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