Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20179
         (522 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   2.2  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   3.8  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   3.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.7  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   8.7  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 163 ISHKQTPKHTPK 198
           + HK TP HTP+
Sbjct: 344 VRHKNTPYHTPE 355


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 TSHTNKHLNTHPNICRMISQTSIHLYMYIYKINVCMFVLY 280
           T  TNK LNT   IC +    S  + ++     + + +++
Sbjct: 492 TKGTNKQLNTLNKICALHHHLSKLVKLFNETFGIVLLLMF 531


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 TSHTNKHLNTHPNICRMISQTSIHLYMYIYKINVCMFVLY 280
           T  TNK LNT   IC +    S  + ++     + + +++
Sbjct: 217 TKGTNKQLNTLNKICALHHHLSKLVKLFNETFGIVLLLMF 256


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/33 (21%), Positives = 15/33 (45%)
 Frame = +2

Query: 164 SHTNKHLNTHPNICRMISQTSIHLYMYIYKINV 262
           S  N H+ +H N+ R   +   +   Y + + +
Sbjct: 272 SMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKI 304


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/33 (21%), Positives = 15/33 (45%)
 Frame = +2

Query: 164 SHTNKHLNTHPNICRMISQTSIHLYMYIYKINV 262
           S  N H+ +H N+ R   +   +   Y + + +
Sbjct: 30  SMLNSHMKSHSNVYRYSCRDCSYATKYCHSLKI 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,360
Number of Sequences: 336
Number of extensions: 1917
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)