Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20179
         (522 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   2.7  
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    24   3.6  
AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          23   6.2  
AY146756-1|AAO12071.1|  282|Anopheles gambiae odorant-binding pr...    23   8.2  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 114 AMPFSVTPRRDTRLSWPARMPARSLFMESHT 22
           AM     PR+ TRL W   MP  S+  + HT
Sbjct: 343 AMLLMKRPRK-TRLRWMMEMPGMSVPPQPHT 372


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +2

Query: 143 LRIWN*TSHTNKHLNTHPNICRMISQTSIHLYMYIYKIN 259
           ++I+  T HTN ++    N C++   T+  +   +Y ++
Sbjct: 394 VKIYLETEHTNMNIYLVQNCCQLFFMTNFGINFILYCVS 432


>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 39  RASVPASWPATTTACRVSA*PRTAWRSPPA 128
           R S+P+ W A  T   +S   +  W   PA
Sbjct: 311 RPSIPSRWIACDTLHAISKVMKECWYQHPA 340


>AY146756-1|AAO12071.1|  282|Anopheles gambiae odorant-binding
           protein AgamOBP40 protein.
          Length = 282

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 419 ASQIGLALSLPSAPRGTRA 363
           A+ + + +SL SAPRGT A
Sbjct: 12  AALLLVCISLASAPRGTEA 30


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,955
Number of Sequences: 2352
Number of extensions: 7961
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)