Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20179
(522 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 48 5e-06
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 48 5e-06
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 39 0.002
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 39 0.002
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 39 0.002
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 38 0.005
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 38 0.005
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 37 0.007
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 37 0.009
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 36 0.017
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 36 0.017
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 36 0.017
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 36 0.022
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 36 0.022
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 35 0.029
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 35 0.029
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 35 0.029
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 35 0.029
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 35 0.029
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 35 0.038
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 35 0.038
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 35 0.038
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 34 0.050
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 34 0.050
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 34 0.050
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 34 0.050
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 34 0.067
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 34 0.067
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 34 0.067
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 33 0.088
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 33 0.088
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 33 0.088
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 33 0.12
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 33 0.12
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 33 0.12
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 33 0.12
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 33 0.12
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 33 0.12
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 33 0.15
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 33 0.15
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 33 0.15
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 33 0.15
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 32 0.20
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 32 0.20
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 32 0.27
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 32 0.27
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 32 0.27
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 32 0.27
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 32 0.27
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 31 0.36
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 31 0.36
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 31 0.36
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 31 0.47
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 31 0.47
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 31 0.47
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 31 0.47
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 31 0.62
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 31 0.62
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 31 0.62
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 31 0.62
At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2 ... 31 0.62
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 31 0.62
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 30 0.82
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel... 30 0.82
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 30 1.1
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 30 1.1
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 30 1.1
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 29 1.4
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 29 1.4
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 29 1.4
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 1.4
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 29 1.4
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 29 1.9
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 29 1.9
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 29 2.5
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 29 2.5
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 29 2.5
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 29 2.5
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 29 2.5
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 28 3.3
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 28 3.3
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 28 3.3
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 28 3.3
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 28 3.3
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 28 3.3
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 28 3.3
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 28 4.4
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 28 4.4
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 28 4.4
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 27 5.8
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 27 7.7
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 27 7.7
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 27 7.7
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 27 7.7
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 27 7.7
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 27 7.7
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 27 7.7
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 27 7.7
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 27 7.7
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 27 7.7
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 47.6 bits (108), Expect = 5e-06
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +2
Query: 17 CNVWDSMKSERAGILA----GHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
C VWD++ E L H NR+S LG++ +G A+ TGSWDS L+IW
Sbjct: 257 CYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGSWDSNLKIW 306
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 47.6 bits (108), Expect = 5e-06
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +2
Query: 17 CNVWDSMKSERAGILA----GHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
C VWD++ E L H NR+S LG++ +G A+ TGSWDS L+IW
Sbjct: 319 CYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGSWDSNLKIW 368
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
VW + L GH RV L V+ +G + TG+ D LR WN
Sbjct: 406 VWKYPTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWN 450
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
D N+W LAGH+++V+ L +T + +AT S D +++W
Sbjct: 487 DMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLW 535
Score = 34.3 bits (75), Expect = 0.050
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGV-TENGMAVATGSWDSFLRIWN 157
+D C +WD + I+ H N VS++ + G +AT S+D + IW+
Sbjct: 443 EDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWS 494
Score = 31.5 bits (68), Expect = 0.36
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHLN 187
D VWD + GH V + + NG +A+G D+ RIW+ K L
Sbjct: 402 DSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWD--LRMRKSLY 459
Query: 188 THPNICRMISQ 220
P ++SQ
Sbjct: 460 IIPAHANLVSQ 470
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
VW + L GH RV L V+ +G + TG+ D LR WN
Sbjct: 449 VWKYPTMSKIATLTGHTYRVLYLAVSPDGQTIVTGAGDETLRFWN 493
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 37.5 bits (83), Expect = 0.005
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 2 YDDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
Y +W + L GH RV L + +G + TG+ D LR WN
Sbjct: 405 YSQNQIMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWN 456
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D C VWD + L+GHDN V + V TGS D+ ++ W+
Sbjct: 281 DSVCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWD 330
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
DD + N+ D+ G ++GH + V + + +G A+ATGS D +R+W+
Sbjct: 221 DDGHVNMHDAEGKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWD 271
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 36.7 bits (81), Expect = 0.009
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSH 169
DD VWD L GH + VS + + TGS D +RIW+ T++
Sbjct: 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWHATTY 261
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 35.9 bits (79), Expect = 0.017
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 5 DDFNCNVWD-SMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
DDF +W+ S+ + L GH V+ + + +G +A+ S+D +R+WN
Sbjct: 337 DDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWN 388
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
D + +W+ + + + GH V ++ + + + +GS DS L+IW
Sbjct: 381 DKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIW 429
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 59 LAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+AGH V + + +G +A+GS D+ +R+W+
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWD 137
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
D +W+ + L GH + V + + +G V +G D L++W
Sbjct: 423 DSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 35.9 bits (79), Expect = 0.017
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
DDF ++D + + GH +R++ L +E+G V + S D LRIW+
Sbjct: 535 DDFVIRLYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWD 585
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 35.9 bits (79), Expect = 0.017
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TS 166
D N +WD K GH +S + T +G V +G D+ +++W+ T+
Sbjct: 121 DANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTA 173
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+WD +++ GH + S + G +A+GS D+ L+IW+
Sbjct: 84 LWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWD 128
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
DD+ N+W K L GH + V + + V G+ +++W+
Sbjct: 36 DDYKVNLWAIGKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGASSGVIKLWD 86
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 35.5 bits (78), Expect = 0.022
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSH 169
DD VWD L GH + VS + + TGS D +RIW+ T++
Sbjct: 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 35.5 bits (78), Expect = 0.022
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TS 166
D N VWD+ K GH +S + + +G V +G D+ +++W+ T+
Sbjct: 70 DTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTA 122
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+WD +S+ GH + S + G +A+GS D+ LR+W+
Sbjct: 33 LWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWD 77
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSH 169
DD VWD L GH + VS + + TGS D +RIW+ T++
Sbjct: 207 DDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSH 169
DD VWD L GH + VS + + TGS D +RIW+ T++
Sbjct: 207 DDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSH 169
DD VWD L GH + VS + + TGS D +RIW+ T++
Sbjct: 207 DDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 35.1 bits (77), Expect = 0.029
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D F VW + IL+GH+ V L + +A+ SWD +R+W+
Sbjct: 455 DSFEIFVWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWD 505
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/74 (24%), Positives = 30/74 (40%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHL 184
DD VW+ M H N V+ L + ++ + S D +R W+ + N
Sbjct: 369 DDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFKRYKNYKT 428
Query: 185 NTHPNICRMISQTS 226
T P + +S T+
Sbjct: 429 YTTPTPRQFVSLTA 442
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 35.1 bits (77), Expect = 0.029
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D F VW + IL+GH+ V L + +A+ SWD +R+W+
Sbjct: 495 DSFEIFVWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWD 545
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/74 (24%), Positives = 30/74 (40%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHL 184
DD VW+ M H N V+ L + ++ + S D +R W+ + N
Sbjct: 409 DDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFKRYKNYKT 468
Query: 185 NTHPNICRMISQTS 226
T P + +S T+
Sbjct: 469 YTTPTPRQFVSLTA 482
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 34.7 bits (76), Expect = 0.038
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TS 166
D N +WD K GH V+ L T +G V +G D+ +++W+ T+
Sbjct: 122 DTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTA 174
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+WD +++ L GH + + G A+GS D+ L+IW+
Sbjct: 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 34.7 bits (76), Expect = 0.038
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TS 166
D N +WD K GH V+ L T +G V +G D+ +++W+ T+
Sbjct: 122 DTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTA 174
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+WD +++ L GH + + G A+GS D+ L+IW+
Sbjct: 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 34.7 bits (76), Expect = 0.038
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D + VWD K E L GH + ++ + ++ +G + T D+ L +W+
Sbjct: 201 DNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWD 250
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 56 ILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+L GH N + L T +G + + S D +R W+
Sbjct: 91 VLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWD 124
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 34.3 bits (75), Expect = 0.050
Identities = 16/70 (22%), Positives = 29/70 (41%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHLN 187
D +W + + +A H+ ++ + +ATGSWD L+ W+ H
Sbjct: 93 DKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTRQQNPVHTQ 152
Query: 188 THPNICRMIS 217
P+ C +S
Sbjct: 153 QLPDKCYTLS 162
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 34.3 bits (75), Expect = 0.050
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHL 184
+D + +W++ K + +GH+ V+ T +G + TGS D+ L +WN + + H+
Sbjct: 175 EDCSLWMWNADKEAYLNMFSGHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHI 234
Query: 185 -NTHP 196
HP
Sbjct: 235 VKGHP 239
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 20 NVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNK 178
++WDS+ GH + V + V+ N + + S D+ R++ + NK
Sbjct: 353 SIWDSLLGNCVHTYHGHQDAVQAISVSTNTDFIVSVSVDNTARVFESSEFQNK 405
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 34.3 bits (75), Expect = 0.050
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*T 163
+D V+D E G GH V + T G++ A+GS D +RIW T
Sbjct: 248 EDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTT 300
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 34.3 bits (75), Expect = 0.050
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*T 163
+D V+D E G GH V + T G++ A+GS D +RIW T
Sbjct: 248 EDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTT 300
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 33.9 bits (74), Expect = 0.067
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+W + L GH +RV + + NG VA+ + D LR+WN
Sbjct: 370 LWKYPSMSKMAELNGHTSRVLFMAQSPNGCTVASAAGDENLRLWN 414
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 33.9 bits (74), Expect = 0.067
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+W + L GH +RV + + NG VA+ + D LR+WN
Sbjct: 372 LWKYPSMSKMAELNGHTSRVLFMAQSPNGCTVASAAGDENLRLWN 416
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 33.9 bits (74), Expect = 0.067
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TS 166
D N +WD K GH V+ L T +G + +G D+ +++W+ T+
Sbjct: 215 DTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTA 267
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+WD +++ L GH + + G A+GS D+ L+IW+
Sbjct: 178 LWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWD 222
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+D VWD + H+ ++ L + +ATGS D ++ W+
Sbjct: 256 EDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWD 306
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 33.5 bits (73), Expect = 0.088
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 29 DSMKSERA-GILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNK 178
DS RA IL GH V + ++G V + SWD + +WN T++
Sbjct: 190 DSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNESTSE 240
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 33.5 bits (73), Expect = 0.088
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 29 DSMKSERA-GILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNK 178
DS RA IL GH V + ++G V + SWD + +WN T++
Sbjct: 190 DSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNESTSE 240
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 33.5 bits (73), Expect = 0.088
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
DD + VWD ++ L GHD++VS + + +G V T + D +++W+
Sbjct: 917 DDLSVIVWDKQTTQLLEELKGHDSQVSCVKML-SGERVLTAAHDGTVKMWD 966
Score = 32.3 bits (70), Expect = 0.20
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
DD+ VW + +LA H V + + + TGS D LR W
Sbjct: 1040 DDWTARVWSVSRGSCDAVLACHAGPVQSVEYSPFDKGIITGSADGLLRFW 1089
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D N+WD ++ L GH + + + E+ + TGS D R+W+
Sbjct: 1001 DTVANIWDIRSGKQMHKLKGHTKWIRSIRMVED--TLITGSDDWTARVWS 1048
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHT 172
+D +WD + L GH++ V L + G +A+GS D +++W+ TS T
Sbjct: 561 EDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTSST 616
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D +WD E I GH + V L ++ +G +A+G D + +W+
Sbjct: 520 DKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWD 569
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D +W + + I+AGH +S + N +ATGS D +R+W+
Sbjct: 481 DRTARIWSMDRIQPLRIMAGH---LSDVDWHPNCNYIATGSSDKTVRLWD 527
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D + ++WD E GH N VS L + +GS+D +++WN
Sbjct: 243 DRHVHIWDVRTREHVQAFPGHRNTVSCLCFRYGTSELYSGSFDRTVKVWN 292
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 5 DDFNCNVWDSMKS-ERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
DD +WD+ E +L GH N V + + +GS+D +RIW
Sbjct: 105 DDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIW 155
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
VWD ++ L GH + V L + G +GS DS +R+W+
Sbjct: 239 VWDPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWD 283
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 56 ILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN-*TSHTNKHLNTHPNICRMI 214
I GH V L + + G + +G + LR+W+ T + L H + R++
Sbjct: 208 IAKGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVL 261
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
VWD ++ L GH + V L + G +GS DS +R+W+
Sbjct: 239 VWDPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWD 283
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 56 ILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN-*TSHTNKHLNTHPNICRMI 214
I GH V L + + G + +G + LR+W+ T + L H + R++
Sbjct: 208 IAKGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVL 261
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +2
Query: 23 VWDSMKSERA-GI----LAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+W K ++A G+ L GH + V + ++ +G +GSWD LR+W+
Sbjct: 42 LWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 91
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D VW+ + LAGH VS + V+ +G A+G D + +W+
Sbjct: 173 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 222
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW-N*TSHTNKHL 184
D +WD + +L H + V+ + +G + + S+D RIW + T H K L
Sbjct: 134 DETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTL 193
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHL 184
DD +WD L GH N + + +GS+D +RIW+ T T K L
Sbjct: 91 DDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVT--TGKCL 148
Query: 185 NTHP 196
P
Sbjct: 149 KVLP 152
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 NC-NVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
NC ++W+ + L GH V + +A+GS D +RIW
Sbjct: 265 NCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTVRIW 312
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN-*TSHTNKHLNTH 193
+WD + L GH ++V+ L + G + + S D FLR+W+ T H + ++ H
Sbjct: 132 LWDVVGESGLFRLRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQHCMQIVSGH 189
Score = 32.3 bits (70), Expect = 0.20
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 26 WDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
WD+ K E L GH + L ++ G + TGS D +R W+
Sbjct: 651 WDADKFEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWD 694
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 59 LAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
L GH V + ++ +G + TGS D L+IW
Sbjct: 578 LYGHKLPVMCIDISSDGELIVTGSQDKNLKIW 609
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D VWD + I GH +V + + NG +A+G D+ RIW+
Sbjct: 151 DSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWD 200
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGV-TENGMAVATGSWDSFLRIWN 157
+D C +WD + I+ H N VS++ + +AT S D + IW+
Sbjct: 192 EDNQCRIWDLRMRKLLYIIPAHVNLVSQVKYEPQERYFLATASHDMNVNIWS 243
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 32.7 bits (71), Expect = 0.15
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+WD GH+ ++ + +ENG +AT + D +R+W+
Sbjct: 380 IWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALDG-VRLWD 423
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*T---SHTNK 178
D ++D + L GH +V+ + + V T S D +RIW + ++T++
Sbjct: 243 DTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTSR 302
Query: 179 H-LNTHPNICRMISQTSIHLY 238
H L H R ++ + + Y
Sbjct: 303 HTLKDHSAEVRAVTVHATNKY 323
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 32.3 bits (70), Expect = 0.20
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D +WD+ + GH V L + NG +A+GS D + IW+
Sbjct: 520 DSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASGSLDKSIHIWS 569
Score = 30.7 bits (66), Expect = 0.62
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 56 ILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHLNTHPNICRMI 214
IL GH + V + + +A+GS D+ RIW+ + K ++T NI +I
Sbjct: 260 ILEGHTSEVCACAWSPSASLLASGSGDATARIWSIPEGSFKAVHTGRNINALI 312
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 32.3 bits (70), Expect = 0.20
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 59 LAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
L GH + V + ++ +G +GSWD LR+W+
Sbjct: 59 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 91
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D VW+ + L GH ++ + V+ +G A+G D + +W+
Sbjct: 172 DKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWD 221
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/50 (22%), Positives = 20/50 (40%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D +WD E GH V + + + + + S D +++WN
Sbjct: 84 DGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWN 133
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 65 GHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSH 169
GH +V + NG +A+GS D RIWN H
Sbjct: 18 GHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPH 52
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
DD VW + GH+ ++ L V+ N + +A+ S D +R+W
Sbjct: 265 DDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRVW 314
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+W + L GH +RV + + +G VA+ + D LR WN
Sbjct: 386 LWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWN 430
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 31.9 bits (69), Expect = 0.27
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+W + L GH +RV + + +G VA+ + D LR WN
Sbjct: 376 LWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWN 420
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 31.9 bits (69), Expect = 0.27
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D VW+ + LAGH ++ + V+ +G A+G D + +W+
Sbjct: 172 DKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWD 221
Score = 31.5 bits (68), Expect = 0.36
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 59 LAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+ GH + V + ++ +G +GSWD LR+W+
Sbjct: 59 MTGHSHFVQDVVLSSDGQFALSGSWDGELRLWD 91
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/50 (22%), Positives = 20/50 (40%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D +WD E GH V + + + + + S D +++WN
Sbjct: 84 DGELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWN 133
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 26 WDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHT 172
WD GHD V+ + ++ V + +D LR+W+ SH+
Sbjct: 87 WDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCRSHS 135
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+W + L GH +RV + + +G VA+ + D LR+WN
Sbjct: 356 LWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWN 400
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 35 MKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
++S G GH V L +E+G +A+G D+ + IW+
Sbjct: 224 IRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWD 264
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 31.5 bits (68), Expect = 0.36
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+W + L GH +RV + + +G VA+ + D LR+WN
Sbjct: 339 LWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWN 383
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
DD +W + GH+ ++ L V+ N VA+ S D +R+W
Sbjct: 325 DDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVW 374
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D VW + ER G GH V ++ + + TGS D ++W+
Sbjct: 58 DHTPTVWFADNGERLGTYRGHSGAVWCCDISRDSSRLITGSADQTAKLWD 107
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+WD GH V+ + +ENG +AT + D +R+W+
Sbjct: 379 IWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDG-VRLWD 422
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 31.1 bits (67), Expect = 0.47
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+WD GH V+ + +ENG +AT + D +R+W+
Sbjct: 379 IWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDG-VRLWD 422
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 30.7 bits (66), Expect = 0.62
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 8 DFNCNVWDSMK--SERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
D N VW++ SE +L GH++ V + +G +AT D + IW
Sbjct: 69 DGNTCVWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIW 119
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D +W + ER G GH+ V V+ + + TGS D ++W+
Sbjct: 31 DHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWD 80
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D +W + ER G GH+ V V+ + + TGS D ++W+
Sbjct: 31 DHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWD 80
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.7 bits (66), Expect = 0.62
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D +W + ER G GH+ V V+ + + TGS D ++W+
Sbjct: 31 DHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWD 80
>At1g36070.1 68414.m04484 WD-40 repeat family protein contains 2
WD-40 repeats (PF0400);similar to guanine
nucleotide-binding protein beta subunit GPBA (SP:P36408)
[Dictyostelium discoideum (Slime mold)]; similar to
katanin p80 (WD40-containing) subunit B 1 (GI:12655011)
[Homo sapiens]
Length = 418
Score = 30.7 bits (66), Expect = 0.62
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D C + DS + L GH + NG+ +ATG+ D+ R+W+
Sbjct: 268 DSTECLISDSHSGKVISSLRGHKDYSFASAWHPNGLILATGNQDTACRLWD 318
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 30.7 bits (66), Expect = 0.62
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D W ++GH + VS L V NG+ + +GSWD +R+W+
Sbjct: 606 DNTIKAWSLQDGSLLCTMSGHKSVVSTL-VVVNGV-LYSGSWDGTVRLWS 653
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D N +WD + +AGH + V+ + ++ NG + T D+ +++
Sbjct: 378 DGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNVFD 427
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 14 NCNVWDSMKSERAGILAGHDNRVSRLGVTE-NGMAVATGSWDSFLRIWN 157
N VWD L GH ++V + V++ + V + ++D +++W+
Sbjct: 296 NLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWD 344
>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to Lipopolysaccharide-responsive and beige-like anchor
protein (CDC4-like protein) (Beige-like protein)
(SP:P50851) [Homo sapiens}
Length = 1280
Score = 30.3 bits (65), Expect = 0.82
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +2
Query: 68 HDNRVSRLGVTENGMAVATGSWDSFLRIWN---*TSHTNKHLNTHPNICR---MISQTSI 229
H + VS + VT + +ATGS+D+ + +W+ + + NTH + R +I+
Sbjct: 1045 HKDVVSCVAVTADSTILATGSYDTTVMVWDILRMRTPEKRVRNTHAEVLRKDIVIADAPS 1104
Query: 230 HLYMYIYKINVCMFV 274
H+ I C++V
Sbjct: 1105 HILCGHDDIITCLYV 1119
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLG--VTENG-MAVATGSWDSFLRIWN*TS 166
V+D + +LAGH V L V+ +G + + TGS D +R+WN TS
Sbjct: 385 VYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATS 435
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 56 ILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
++A HD ++ + V N V TGS D IW
Sbjct: 494 VVAAHDKDINSVAVARNDSLVCTGSEDRTASIW 526
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNK 178
+W+ SE H+++V L V + +ATG D+ + +W+ ++ ++K
Sbjct: 609 LWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASDK 660
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 5 DDFNCNVWD----SMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
DD VWD + + + I+ H + V+ + ++E+G+ + + D + +W+
Sbjct: 166 DDATVRVWDLNAKNTEKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWD 220
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 20 NVWD-SMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
N W+ S +S GIL GH + V LG+ G + +GS D + +W
Sbjct: 349 NYWERSKRSFTGGILKGHKSAVLCLGIA--GNLLLSGSADKNICVW 392
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRV-SRLGVTENGMAVATGSWDSFLRIWN*TSHTNKH 181
D VWD +++ G+L GH V S N + +GS D +W+ ++ H
Sbjct: 149 DQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDLRCKSSSH 207
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGI-LAGHDNRVSRLGVTENGMA-VATGSWDSFLRIWN*TSHTNKH 181
D N +W K + I L GHD V+ + + + + VAT S D +R+WN ++ +
Sbjct: 359 DGNAYIWQVNKPQVDPIILKGHDFEVTAVDWSPSEIGKVATASDDFTVRLWNIENNICTN 418
Query: 182 LNTHPNICRM 211
N ++ R+
Sbjct: 419 ANATASVSRV 428
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Frame = +2
Query: 2 YDDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTN-- 175
Y D C D + SE IL H N V + + +G +AT S D IW
Sbjct: 202 YKDHCCGR-DQIPSETVQILVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVE 260
Query: 176 -KH-LNTHPNICRMIS 217
KH L +H N +S
Sbjct: 261 LKHTLESHQNPVSFVS 276
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 59 LAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKH 181
L GH V+ L NG + +GS D + IWN +S H
Sbjct: 46 LEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLH 86
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 5 DDFNCNVWDSM----KSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
DD C VWD + + AG+L GH V+ + +G + D +++W+
Sbjct: 292 DDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWD 346
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 59 LAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHLNTHPNICRM 211
L GH + V+ L + N + T S D +R+WN + HL+ P ++
Sbjct: 285 LKGHKSAVTWLCFSPNSEQIITASKDGSIRVWN--INVRYHLDEDPKTLKV 333
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/74 (21%), Positives = 30/74 (40%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHL 184
DD +W+ +L GH++ V V + S D +R+W+ + K +
Sbjct: 113 DDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTV 172
Query: 185 NTHPNICRMISQTS 226
+ +I R+ S
Sbjct: 173 SPADDIMRLTQMNS 186
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 5 DDFNCNVW--DSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHT 172
DD +W + K+ L GH N VS + + + S D +R+W+ T T
Sbjct: 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRT 281
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
D C VWD + +L HD+ V + V TGS DS ++ W+
Sbjct: 275 DSVCRVWDIRTKMQIFVLP-HDSDVFSVLARPTDPQVITGSHDSTIKFWD 323
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 8 DFNCNVWDSMKSERAGI--LAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
D +W + SE I L GH+N V + +G +AT S D + IW
Sbjct: 95 DGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIW 145
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
DD + + D+ + G L GH + NG+ ATG+ D RIW+
Sbjct: 297 DDPDGLLVDTSNGQTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWD 347
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
DD + + D+ + G L GH + NG+ ATG+ D RIW+
Sbjct: 291 DDPDGLLVDTSNGQTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWD 341
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 38 KSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHLNTHPNICRMIS 217
K + G L GH+ V+ + G + +GS D + +WN S + K L+ C +
Sbjct: 44 KLDLYGKLNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWNWLSGSRK-LSYPSGHCENVF 102
Query: 218 QT 223
QT
Sbjct: 103 QT 104
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHT 172
DD+ VW+ L GH + + + + + S D +RIWN S T
Sbjct: 71 DDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRT 126
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 5 DDFNCNVW--DSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHT 172
DD +W + K+ L GH N VS + + + S D +R+W+ T T
Sbjct: 224 DDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRT 281
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 53 GILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKHLNTHPNICR 208
G GH V + +N + A+ S D +IWN + H H +I R
Sbjct: 50 GTFEGHKGAVWSCSLDKNAIRAASASADFTAKIWNALTGDELHSFEHKHIVR 101
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 2 YDDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
Y D C + S+ A IL H + V L + NG +A+ S D IW
Sbjct: 252 YSDHQCGK-HQIPSQTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIW 301
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
+W++M++ + +AGH+ +S L + + VA+ S D ++IW
Sbjct: 742 LWNTMEN-KCMTVAGHECVISALAQSPSTGVVASASHDKSVKIW 784
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
+W++M++ + +AGH+ +S L + + VA+ S D ++IW
Sbjct: 744 LWNTMEN-KCMTVAGHECVISALAQSPSTGVVASASHDKSVKIW 786
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
+W++M++ + +AGH+ +S L + + VA+ S D ++IW
Sbjct: 744 LWNTMEN-KCMTVAGHECVISALAQSPSTGVVASASHDKSVKIW 786
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
+W++M++ + +AGH+ +S L + + VA+ S D ++IW
Sbjct: 744 LWNTMEN-KCMTVAGHECVISALAQSPSTGVVASASHDKSVKIW 786
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
+W++M++ + +AGH+ +S L + + VA+ S D ++IW
Sbjct: 744 LWNTMEN-KCMTVAGHECVISALAQSPSTGVVASASHDKSVKIW 786
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 68 HDNRVSRLGVTENGMAVATGSWDSFLRIW 154
H + VS L ++++G + + SWD +IW
Sbjct: 191 HVDAVSSLALSQDGSLLYSASWDRSFKIW 219
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 68 HDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
HD+ ++ + V+++G V TGS D +++WN
Sbjct: 234 HDDAINAIVVSKDGF-VYTGSADKKIKVWN 262
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 59 LAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
L GH+ VS + + + TGS D LR+W+
Sbjct: 147 LDGHEKLVSGIALPSGSDKLYTGSKDETLRVWD 179
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 68 HDNRVSRLGVTENGMAVATGSWDSFLRIWN*T 163
H + VS L ++ +G + + SWD L+IW T
Sbjct: 164 HVDAVSGLALSRDGTLLYSVSWDRTLKIWRTT 195
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTE--NGMAVATGSWDSFLRIWN*TSHTN 175
DD WD + L GH + V R G N + TGS+D +++W+ HT+
Sbjct: 156 DDGVVKYWDVAGATVISDLLGHKDYV-RCGDCSPVNDSMLVTGSYDHTVKVWDARVHTS 213
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 68 HDNRVSRLGVTENGMAVATGSWDSFLRIW 154
H + VS L + E+ + +GSWD L++W
Sbjct: 244 HFDAVSCLSLNEDLGLLYSGSWDKTLKVW 272
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 59 LAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TS 166
L GH+ ++ L + ++ +GSWD +RIW+ +S
Sbjct: 253 LWGHEGPITSLALDMT--SIFSGSWDMSVRIWDRSS 286
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 23 VWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
+WD+ L GH N V + +NG + T S D +++++
Sbjct: 294 LWDTRSGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYD 338
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 68 HDNRVSRLGVTENGMAVATGSWDSFLRIW 154
H + +S L ++E+ + +GSWD ++W
Sbjct: 210 HLDAISCLALSEDKRLLYSGSWDKTFKVW 238
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 56 ILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
IL HD V + + V TGSWD ++ W+
Sbjct: 93 ILGTHDKAVRCVEYSYAAGQVITGSWDKTVKCWD 126
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 68 HDNRVSRLGVTENGMAVATGSWDSFLRIW 154
H + VS L + E + +GSWD L++W
Sbjct: 248 HYDAVSCLSLNEELGLLYSGSWDKTLKVW 276
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 2 YDDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN*TSHTNKH 181
YD C + + S+ GH + + + +G V T S D +IW+ + + +
Sbjct: 214 YDGKTCEILGELSSDD-----GHKGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGS 268
Query: 182 LNTHPN 199
LNT N
Sbjct: 269 LNTTLN 274
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 5 DDFNCNVWDSMKSERAGILAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
+D ++D + G GH V + G + A+GS D +RIW
Sbjct: 248 EDMWVRLFDFHTGKEIGCNKGHHGPVHCVRFAPTGESYASGSEDGTIRIW 297
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 65 GHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
GH V+ + +G +A+GS D +R+W
Sbjct: 421 GHTGAVTSISTDSSGEWIASGSTDGSVRMW 450
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 59 LAGHDNRVSRLGVTENGMAVATGSWDSFLRIWN 157
L GH VS L V G V +GS+D +R+++
Sbjct: 173 LKGHTKIVSSLAVDSAGARVLSGSYDYTVRMYD 205
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 59 LAGHDNRVSRLGVTENGMAVATGSWDSFLRIW 154
L GH V+ + N +A+ S D +R+W
Sbjct: 212 LTGHSKDVTDFDFSSNNQYIASSSLDKTIRVW 243
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,842,700
Number of Sequences: 28952
Number of extensions: 160194
Number of successful extensions: 598
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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