Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20177
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   0.87 
S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.           24   1.2  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 354 QRLSNVETILLQKEEREKGSXKKTDEALESIQKSIPSSNDDSHRECQ 494
           Q   +++   +    RE+   +  +EA  S++KSIP+   D   + Q
Sbjct: 89  QSFEDIQHQRVMANVRERQRTQSLNEAFASLRKSIPTMPSDKLSKIQ 135


>S73230-1|AAB30812.1|   35|Tribolium castaneum twist protein.
          Length = 35

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 399 REKGSXKKTDEALESIQKSIPSSNDDSHRECQ 494
           RE+   +  +EA  S++KSIP+   D   + Q
Sbjct: 4   RERQRTQSLNEAFASLRKSIPTMPSDKLSKIQ 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,890
Number of Sequences: 336
Number of extensions: 2057
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)