Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20177
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 31 0.94
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 31 0.94
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 29 2.2
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 28 6.7
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 27 8.8
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104... 27 8.8
02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174 27 8.8
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Frame = +3
Query: 219 SNRRQTGET*VQEKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEE 398
+ +QT E ++++ EQ+ + LD+ E L+G I+ L+ +L+ +++L Q E+
Sbjct: 348 AKEKQTWEATLEKQQ--EQILNLQTELDESKGGNETLRGTIADLNSKLAERDSLLRQAED 405
Query: 399 REKGSXKKTDEAL---ESIQKSIPSSND 473
+ EAL + ++ ++ S N+
Sbjct: 406 EHAKAQLLLSEALSHKDELEVNLKSINE 433
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 258 KMLGE---QVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTD 428
K+L E ++ +++ L+ R + L+ I RL++ E +LL +++ + +
Sbjct: 1517 KLLAEAHLEIDELIRKLEDSDRKSDSLQSTIKRLEEDGIAKEALLLTEKQAHEATRMTLT 1576
Query: 429 EALESIQKSIPSSNDD 476
EALE ++ + +DD
Sbjct: 1577 EALEKNEELLKKIHDD 1592
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +3
Query: 270 EQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTDEALESIQ 449
+ + K + LDKK L LK ISRL ++ + ++ +++K KK E ++S+Q
Sbjct: 298 KSIAKKKLELDKKQPELLRLKEQISRLKSKIKSCN----KEIDKKKDDSKKHLEEMKSLQ 353
Query: 450 KSI 458
++
Sbjct: 354 SAL 356
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/77 (22%), Positives = 38/77 (49%)
Frame = +3
Query: 216 ASNRRQTGET*VQEKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKE 395
++NR Q +T V+ + +QVK + +D + + ++ I L+ L ++ + +
Sbjct: 226 SANRAQIQDTVVERDAIQDQVKIIGEGIDGVKKERQAVRSKIKVLEDELKAIDMEMGSLQ 285
Query: 396 EREKGSXKKTDEALESI 446
E + + D+A ES+
Sbjct: 286 EDLTAANARKDKAHESL 302
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 27.5 bits (58), Expect = 8.8
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +3
Query: 303 KKHRMLEPLKGMISRLDQRLSNVETILLQKEE--REKGSXKKTDEALESIQKSIPSSNDD 476
K+ RM + + S LDQ T+ EE REK ++ + + ++ SI + DD
Sbjct: 186 KQARMFQEKEA--SLLDQLTLTKRTVTSLNEEVRREKELVEQLKQEIHRLKSSIAQAEDD 243
Query: 477 SH-RECQGK*K*EVGX*LESYXNTLERRLNA 566
H E + + K E L+ N L + +NA
Sbjct: 244 KHVFEGKLREKLEALDSLQDKVNLLSQEVNA 274
>03_05_1143 + 30709825-30709926,30710105-30710260,30710356-30710439,
30710769-30710882,30711019-30711111,30711888-30711977,
30712157-30712227,30712300-30712374,30712481-30712568,
30712748-30712806,30712893-30712956,30713030-30713095,
30713283-30713435,30713522-30713626,30713739-30713974,
30714104-30714173,30714286-30714339,30714501-30714557,
30714662-30714741,30716056-30717919
Length = 1226
Score = 27.5 bits (58), Expect = 8.8
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Frame = +3
Query: 216 ASNRRQTGET*VQEKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQ---------RLSN 368
AS + + ET ++ K+ G +VK L + + + + E + I +D
Sbjct: 985 ASTKARESETALRSKIDGLKVK--LRSFEAQRKEAERVLFAIDNIDTSTPTLSKPVNFGK 1042
Query: 369 VETILLQKEEREK--GSXKKTDEALESIQKSIPSSNDDSHRECQ 494
+L +EER K KK+ E L +QK I S N +C+
Sbjct: 1043 ASELLRSEEERTKLLSELKKSREQLIMVQKEIKSMNRHDDIDCK 1086
>02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174
Length = 514
Score = 27.5 bits (58), Expect = 8.8
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 1/132 (0%)
Frame = +3
Query: 87 RHAERNQTMVGRRRASIVDSSNRMPGSYNRGYPGCADDLSSFGASNRRQTGE-T*VQEKM 263
RH++ + RRR+S S PGS G G +L++ E T ++++
Sbjct: 161 RHSKHLLKKIVRRRSSPTQQSGLQPGS--SGESGLDPELNTLRREKSALLQEVTRLKQEH 218
Query: 264 LGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTDEALES 443
L + +++M + + K M+S L + L N + K R++ T
Sbjct: 219 L-QTIEQMSTLNQRLESAEDRQKQMVSFLAKLLQNPTFLRQLKMHRQQKEIDST-RVKRK 276
Query: 444 IQKSIPSSNDDS 479
K +P N DS
Sbjct: 277 FLKHVPHGNIDS 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,485
Number of Sequences: 37544
Number of extensions: 240277
Number of successful extensions: 578
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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