Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20177
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)                  31   0.55 
SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_16650| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        31   0.97 
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   2.9  
SB_34623| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         28   5.1  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)                   27   9.0  

>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
          Length = 332

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = +3

Query: 267 GEQVKKMLMALDKKHRMLEPLKGM----ISRLDQRLSNVETILLQKEEREKGSXKKTDEA 434
           GE ++K+   +++K R +  L+      + +L +R+  +E    + EE E  S K    A
Sbjct: 45  GEDIEKLKQEIEQKEREINNLRKTRNDEVKKLKERIHVLEEEKKRLEE-ELASVKYKLTA 103

Query: 435 LESIQKSIPSSNDDSHRECQ 494
           LES  K++ ++ND    E Q
Sbjct: 104 LESEVKALSNANDRQEEEKQ 123


>SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +3

Query: 186 GCADDLSSFGASNRRQTGET*VQEKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLS 365
           G AD   S  A   ++  E   + KML E  +++ M LD+  R LE     + ++    +
Sbjct: 142 GGADTYKSAVAKKNKELSEYLDELKMLQETNEELEMKLDESKRELEAATTEMDKIADEYT 201

Query: 366 NVETILLQKE 395
            ++TIL Q +
Sbjct: 202 KLKTILQQSD 211


>SB_16650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 499 FPWHSL*LSSLELGIDFWILSSASSVFF 416
           F WHSL      LGI  W+ S+A  VFF
Sbjct: 470 FVWHSLRHILFRLGIGTWLASTACGVFF 497


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
 Frame = +3

Query: 21  LTPLNRYKNEQSAS*FNLELKGRHAER-NQTMVGRR---RASIVDSSNRMPGSYNRGYPG 188
           L  LNR      A   N +LK RH++  N   +G+    ++  ++  NR+     R    
Sbjct: 237 LEDLNRMNEHLDAE--NKQLKARHSDSSNLNELGKSLKVKSEALEGLNRLNEHLEREVTN 294

Query: 189 CADDLSSFGASNRRQTG-----ET*VQEKMLGEQVK----KMLMALDK-KHRMLEPLKGM 338
             + L++ G S++ Q       ET  Q +M  E+++     +L  L+  +    + L  +
Sbjct: 295 LRNQLAAKGDSSQSQYDQDQLYETVRQREMEVEELQMQNQNLLQRLEAVESETTDNLSDL 354

Query: 339 ISRLDQRLSNVETILLQKEEREKGSXKKTDEALESIQKSI 458
           +SR ++ +  +    +Q EE+ + S    D+  ES ++S+
Sbjct: 355 VSRKEKEIEELIATRVQLEEKLENSAHVHDQLEESHRRSM 394


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
 Frame = +3

Query: 132  SIVDSSNRMPGSYNRG-YPGCADDLSSFGASNRRQTGET*V--QEKMLGEQVKKMLMALD 302
            S++      PGS + G + G  D +   G S+     E     QE +L E V   +   D
Sbjct: 887  SLLSEKPSSPGSSHVGNFQGICDKMDVDGPSHNMPHDEQHYHKQEAILDESVVVKIEVPD 946

Query: 303  KKHR-----MLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTDE 431
            ++       ++ P  GM++ +DQ + +     L  +E E G    T+E
Sbjct: 947  EETAAEVAALINPEHGMLTLVDQGIESATVEKLDLQESEHGKGPSTEE 994


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/79 (20%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
 Frame = +3

Query: 249 VQEKMLGEQVKKMLMALDKKHRMLEPL-----KGMISRLDQRLSNVETILLQKEEREKGS 413
           +Q+++   +  ++  AL KK + +E L     + M + LD+++  +E  + +KE +++ +
Sbjct: 234 MQKEISAAKDSELEKALAKKEKEMEALLASKEEHMKALLDEKVKEIEIAVDEKELQKEAA 293

Query: 414 XKKTDEALESIQKSIPSSN 470
            K+ ++ L+ ++  +   N
Sbjct: 294 LKEKEKELQQLKNQVEELN 312


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
 Frame = +3

Query: 255 EKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSN-VETILL--------QKEEREK 407
           EK L +Q  ++   L+ K+   + L   +  L  R  N +E IL         + E+ ++
Sbjct: 367 EKDLEKQFLELRQKLEGKY--YDELDSTVKNLQDRYQNDLEDILRDVQASHENELEKLKR 424

Query: 408 GSXKKTDEALESIQKSIPSSNDDSHRECQ 494
           G  ++ D  +E +++ + ++ DD  +EC+
Sbjct: 425 GCEEEKDSEIEQLREELRTTRDDFEKECE 453


>SB_34623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
 Frame = +3

Query: 252 QEKMLGEQVKKM-------LMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKG 410
           QEK+LGE+VKK+       +  L++   +L+  + +I+ L++++++      +    E  
Sbjct: 351 QEKLLGEKVKKLNESLESTMAKLEESKELLKTNENVINWLNKQMNDQMVARQRHGPFELH 410

Query: 411 SXKKTDEALESIQKSIPSSNDDS 479
           S K    A E    S+PS+   S
Sbjct: 411 SAKDPAFARELTASSVPSTTSGS 433


>SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 393 EEREKGSXKKTDEALESIQKSIPSSNDDSHRE 488
           E  E G+  +T    +S   + PSSN+ SHR+
Sbjct: 741 ENSEDGNFPETSSTNKSTSTTYPSSNEPSHRD 772


>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/85 (21%), Positives = 41/85 (48%)
 Frame = +3

Query: 252 QEKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTDE 431
           + K + E   KM +A  +        K   ++L +  +N+E+++ QK+ + K   K  ++
Sbjct: 266 KNKDVNETKSKMDVAKSELEIYNSQHKNAQTQLREAHANLESVI-QKQTQRKSEIKSIEK 324

Query: 432 ALESIQKSIPSSNDDSHRECQGK*K 506
            L  ++ ++  +  D  +  QG+ K
Sbjct: 325 ELPDLKNNLKKAEADLEKAVQGEAK 349


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/61 (21%), Positives = 31/61 (50%)
 Frame = +3

Query: 303 KKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTDEALESIQKSIPSSNDDSH 482
           ++ ++   LK +     QRL  +E    ++EE+++      DE L+ +Q+ I    +++ 
Sbjct: 668 RRQKVEAELKLIEDEHKQRLEELEKKTKKEEEKKRSEHVNNDEELDRLQEEIKQMGEENE 727

Query: 483 R 485
           +
Sbjct: 728 K 728


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 312  RMLEPLKGMISRLDQRLSNVETILLQKEEREK-GSXKKTDEALESIQKSI 458
            + LE  KGM   L++R   ++  + + E+REK    +K+D+ + +++K I
Sbjct: 881  KQLEESKGMYLLLEKRYHLLKNKVKELEDREKISKQEKSDKLVVTLRKRI 930


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 249 VQEKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTD 428
           +QE  L  +  K +  LD      +  +  I R D+R+  VET +  +   + G+ K  +
Sbjct: 475 IQEVNLAYENVKEVDGLDVSKEGSDAWEAAIKRYDERIDRVETRITARLRDQLGTAKNAN 534

Query: 429 E 431
           E
Sbjct: 535 E 535


>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
          Length = 290

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 423 TDEALESIQKSIPSSNDDSHRECQ 494
           T+  LESI+KSI +S++    EC+
Sbjct: 100 TERCLESIEKSITTSSESIPEECE 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,317,409
Number of Sequences: 59808
Number of extensions: 281032
Number of successful extensions: 747
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)