Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20177
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50380.1 68418.m06240 exocyst subunit EXO70 family protein co...    34   0.064
At1g04780.1 68414.m00474 ankyrin repeat family protein contains ...    33   0.11 
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t...    30   1.4  
At5g55660.1 68418.m06940 expressed protein similar to unknown pr...    29   2.4  
At5g38150.1 68418.m04598 expressed protein                             28   4.2  
At3g04260.1 68416.m00450 SAP domain-containing protein contains ...    28   4.2  
At2g20020.1 68415.m02340 expressed protein                             28   4.2  
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m...    28   5.6  
At4g31615.1 68417.m04491 transcriptional factor B3 family protei...    27   7.4  
At3g25680.1 68416.m03196 expressed protein                             27   7.4  
At2g28220.1 68415.m03426 aspartyl protease family protein contai...    27   7.4  
At1g69070.1 68414.m07903 expressed protein                             27   7.4  
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my...    27   7.4  
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin...    27   9.7  
At5g22040.1 68418.m02566 expressed protein                             27   9.7  
At1g04985.1 68414.m00498 expressed protein                             27   9.7  

>At5g50380.1 68418.m06240 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 683

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +3

Query: 279 KKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTDEALESIQKSI 458
           ++++ +L+    + E +  + S  D RLSN++T +  +EE +  +     EA ES+    
Sbjct: 31  QQIMKSLNTPKEVREDMLLIFSSFDNRLSNIKTAMTNQEENQNDALVARLEAAESVIHRW 90

Query: 459 PSSNDDS 479
              ND S
Sbjct: 91  DGGNDSS 97


>At1g04780.1 68414.m00474 ankyrin repeat family protein contains
           Pfam PF00023: Ankyrin repeat
          Length = 664

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 26/95 (27%), Positives = 41/95 (43%)
 Frame = +3

Query: 75  ELKGRHAERNQTMVGRRRASIVDSSNRMPGSYNRGYPGCADDLSSFGASNRRQTGET*VQ 254
           +L  R  E+ + MVG+ +A + D  N +    +R  PG   D   F  +N+    E+   
Sbjct: 278 QLTWRRQEKTE-MVGQWKAKVYDMHNVVVSIKSRRVPGAMTDEELFSNTNQENDTESEDL 336

Query: 255 EKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQR 359
             +L E  K+ L    K     E   G  SR+ Q+
Sbjct: 337 GDILTEDEKRQLELALKLDSPEESSNGESSRISQK 371


>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
           SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
           GI:14279543; contains Pfam profiles PF02483: SMC family
           C-terminal domain, PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1171

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/71 (18%), Positives = 37/71 (52%)
 Frame = +3

Query: 264 LGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTDEALES 443
           LG+ VKK+   +++    ++  +G+       +S +E  +   ++  +G  K  ++ +++
Sbjct: 736 LGDAVKKLEEEVEEMRSQIKEKEGLYKSCADTVSTLEKSIKDHDKNREGRLKDLEKNIKT 795

Query: 444 IQKSIPSSNDD 476
           ++  I +S+ D
Sbjct: 796 LKARIQASSKD 806


>At5g55660.1 68418.m06940 expressed protein similar to unknown
           protein (pir||T08929)
          Length = 778

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 396 EREKGSXKKTDEALESIQKSIPSSNDDSHRE 488
           +R   S KKT+EA  + +KS+  S+D+S  E
Sbjct: 502 KRSAKSQKKTEEATRTNKKSVAHSDDESEEE 532


>At5g38150.1 68418.m04598 expressed protein
          Length = 574

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = +3

Query: 252 QEKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTD- 428
           QEK +  +V KM     +  R+LE +K  +SR+   +S+V    +  EE+ +    KT+ 
Sbjct: 80  QEKDM--EVLKMEEKYAEVMRVLEVVKEEVSRVKLDVSSVLIERVAAEEKVEELRFKTEG 137

Query: 429 --EALESIQKSIPSSNDDSHRECQGK 500
               LES++K I  +N++      GK
Sbjct: 138 GLRLLESLKKEIEVANEEHLMVALGK 163


>At3g04260.1 68416.m00450 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 913

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 369 VETILLQKEEREKGSXKKTDEALESIQKSIPSSNDDSHRECQG 497
           +ET +  KE  E     ++++A+E I K   +  DD   E +G
Sbjct: 624 IETSVESKETTESVVTGESEKAIEDISKEADNEEDDDEEEQEG 666


>At2g20020.1 68415.m02340 expressed protein
          Length = 701

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 387 QKEEREKGSXKKTDEALESIQKSIP 461
           ++EE+E+GS KK DE  E  ++ +P
Sbjct: 663 EREEKEEGSKKKMDEFAEDYREVMP 687


>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
           myosin heavy chain (GI:4249703) [Rana catesbeiana];
           similar to smooth muscle myosin heavy chain SM2
           (GI:2352945) [Homo sapiens]
          Length = 476

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/56 (25%), Positives = 31/56 (55%)
 Frame = +3

Query: 321 EPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTDEALESIQKSIPSSNDDSHRE 488
           E +KG++ +++     +E++  QK+E E    KK +E  E+ +  + S  +++  E
Sbjct: 89  ERVKGLMDQVNGMKHELESLRSQKDESEAKLEKKVEEVTET-KMQLKSLKEETEEE 143


>At4g31615.1 68417.m04491 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 478

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 207 SFGASNRRQTGET*VQEKMLGEQVKKMLMALDKKHRMLE 323
           SF A+NR +TGET   E + GE    ML    K    +E
Sbjct: 339 SFCAANRLKTGETFTLEFVRGEGTTPMLKFCSKSKDKIE 377


>At3g25680.1 68416.m03196 expressed protein
          Length = 558

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +3

Query: 252 QEKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTDE 431
           QEK   E++K+   A+D + ++L  L   I  + QRL + +++ L +  + +        
Sbjct: 447 QEKWSAERLKEKA-AIDCQKQLLNSLTEEIDEMSQRLISDKSVYLTEHSKLQEMLSDLQS 505

Query: 432 ALESI 446
            LES+
Sbjct: 506 KLESL 510


>At2g28220.1 68415.m03426 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 756

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 394 SFCRRIVSTFESL*SSLDIIPFSGSNILCFLSSAISIF 281
           S+C  +    E + +++ +   SG+++LC+ S  I IF
Sbjct: 304 SYCNLVRKAVEQVVTAVRVPDPSGNDMLCYFSETIDIF 341



 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 394 SFCRRIVSTFESL*SSLDIIPFSGSNILCFLSSAISIF 281
           S+C  +    E + +++ +      N+LC+ S  I IF
Sbjct: 643 SYCNLVREAVEQVVTAVKVPDMGSDNLLCYYSDTIDIF 680


>At1g69070.1 68414.m07903 expressed protein
          Length = 901

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 327 LKGMISRLDQRLSNVETILLQKEEREKGSXKKTDEALESIQKSIPSSNDDSHRE 488
           + G +S   +    + T+L Q   +EK   +   E LE + K I    DD H+E
Sbjct: 736 INGGLSSFPEIFMPISTLLHQIGNQEK-IPQTLKEKLEDVAKLIEKKTDDHHKE 788


>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
           myosin II heavy chain (GI:19879404) [Loligo pealei];
           ESTs gb|AA042402,gb|ATTS1380 come from this gene
          Length = 828

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +3

Query: 255 EKMLGEQVKKMLMALDKKHRMLEPLKGMISRLDQRLSNVETILLQKEEREKGSXKKTDEA 434
           EK L + ++  L   D KH+ L  +K     L   L N    +++ E+R + S  +  E 
Sbjct: 58  EKQL-KSLEDALQLHDVKHKELTEVKEAFDGLGLELENSRKKMIELEDRIRISALEA-EK 115

Query: 435 LESIQKSIPSSNDD 476
           LE +QK   S  ++
Sbjct: 116 LEELQKQSASELEE 129


>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 283

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = +3

Query: 318 LEPLKGMISRLDQRLSN-VETILLQ-KEEREKGSXKKTDE-ALESIQKSIPSSNDDSHRE 488
           L+P+K +  +L+++    V+ +  Q K+E+EK +  K DE   +S +K  P +ND   +E
Sbjct: 71  LDPVK-LREKLEEKTKKKVDLVSPQPKKEKEKENKNKNDEDKKKSEEKKKPDNNDKKPKE 129


>At5g22040.1 68418.m02566 expressed protein
          Length = 284

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/66 (22%), Positives = 31/66 (46%)
 Frame = +3

Query: 42  KNEQSAS*FNLELKGRHAERNQTMVGRRRASIVDSSNRMPGSYNRGYPGCADDLSSFGAS 221
           K E+     +L  + +  ++   M+ +   ++V  +N MP  + +GY G A D ++   +
Sbjct: 178 KREEIMRKESLARQQQFKQQTMGMMDQYHPNVVGQANLMPSGHPQGYIGSAQDPAAVADA 237

Query: 222 NRRQTG 239
             R  G
Sbjct: 238 PPRSYG 243


>At1g04985.1 68414.m00498 expressed protein
          Length = 193

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 342 SRLDQRLSNVETILLQKEEREKGSXKK 422
           +R++QRL ++E  +   +E E+G  KK
Sbjct: 73  TRINQRLESIENAMKNTQELERGELKK 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,694,981
Number of Sequences: 28952
Number of extensions: 199273
Number of successful extensions: 631
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)