Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20176
         (571 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       27   0.085
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   4.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.4  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   9.8  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 0.085
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 475 PIHVDVLYHGRPQSPDR 425
           PIH  V+YH  P+ P+R
Sbjct: 45  PIHQTVIYHNNPRDPNR 61


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 399 QEESRVMTFLYKNEQYFWFSVQSR 328
           Q    V+  LYKN+Q +W  ++++
Sbjct: 83  QGAKTVIQHLYKNKQDWWKQLEAK 106


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 70  YITLIWRWMRDVSA 29
           Y+T IW W+ ++SA
Sbjct: 128 YMTGIWVWLINISA 141


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 70  YITLIWRWMRDVSA 29
           Y+T IW W+ ++SA
Sbjct: 361 YMTGIWVWLINISA 374


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 70  YITLIWRWMRDVSA 29
           Y+T IW W+ ++SA
Sbjct: 361 YMTGIWVWLINISA 374


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 364 LVQKRHHTRFFLPGNNAR 417
           L+Q+R HTR     +N R
Sbjct: 273 LIQRRTHTRHTTTSHNTR 290


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 250 TEHEHLLRQNPLTFLESMEM 191
           T+H  LL Q P  F E +++
Sbjct: 226 TDHGFLLGQKPFIFQEVIDL 245


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,749
Number of Sequences: 336
Number of extensions: 2934
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)