Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20176
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    62   6e-11
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    30   0.21 
SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    29   0.36 
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    27   1.9  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   5.9  

>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 62.1 bits (144), Expect = 6e-11
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
 Frame = +1

Query: 259 SEGQFAEVMKSELTGLHRAYQRVAGLNAKPEVLFILVQKRHHTRFFLPGNN---ARFNVD 429
           SEGQF  V+  EL+ +  A   ++     P++L    QKRHH RFF+   +      N  
Sbjct: 654 SEGQFLSVINDELSQIKEACHSLSP-KYNPKILVCTTQKRHHARFFIKNKSDGDRNGNPL 712

Query: 430 PGTVVDRDIVHPRELDFYFGVSPSDQG 510
           PGT++++ + HP + DFY    PS QG
Sbjct: 713 PGTIIEKHVTHPYQYDFYLISHPSLQG 739


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -1

Query: 304  IQSVHSSLPQQIDPQKPVTEHEHLLRQNPLTFLESMEMIHHYILKLNDHLFLRCLYAQFD 125
            +QS+++   ++  P   +     L+R   L FLE+ +++ H +LK  DH       A F+
Sbjct: 1361 LQSLNTETGEKSAPLLLMLLSAILMRLKDLEFLETKDLLRHVVLKYIDHTNPEIRKATFN 1420

Query: 124  V 122
            V
Sbjct: 1421 V 1421


>SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 128

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -1

Query: 274 QIDPQKPV--TEHEHLLRQNPLTFLESMEMIHHYILKLNDHLFLRCLYAQFDVIYV 113
           Q +P KP+  TE+ HLLR   L   +S E     ILKLN+ +       + D  ++
Sbjct: 16  QGNPPKPIGLTEYGHLLRLVGLREADSKEENERTILKLNEGIIQMHAIERLDTSFI 71


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = +1

Query: 262 EGQFAEVMKSELTGLHRAYQRVAG----LNAKPEVLFI 363
           E  F       L GLHR Y++  G    LN  P VLFI
Sbjct: 87  EEHFVRTTDGYLLGLHRVYKKKKGKIEELNYLPPVLFI 124


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 14  AVMIVGADVTHPSPDQSNIPSIAAV 88
           A+   G+ VT  S D S IPS+AAV
Sbjct: 137 AIDSTGSLVTDNSTDDSRIPSLAAV 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,708
Number of Sequences: 5004
Number of extensions: 50272
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)