Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20176
(571 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41291| Best HMM Match : Piwi (HMM E-Value=0) 58 5e-09
SB_35869| Best HMM Match : Piwi (HMM E-Value=4.6e-12) 56 3e-08
SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33) 47 1e-05
SB_17254| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 6e-04
SB_9279| Best HMM Match : Piwi (HMM E-Value=0) 40 0.002
SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.031
SB_3631| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_51018| Best HMM Match : RVT_1 (HMM E-Value=5.8e-17) 28 4.7
SB_28788| Best HMM Match : RVP (HMM E-Value=0.028) 28 4.7
SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066) 28 4.7
SB_18007| Best HMM Match : RVP (HMM E-Value=0.047) 28 4.7
SB_12598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 28 4.7
SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 28 4.7
SB_860| Best HMM Match : RVP (HMM E-Value=0.018) 28 4.7
SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22) 28 4.7
SB_46473| Best HMM Match : RVP (HMM E-Value=0.029) 28 4.7
SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17) 28 4.7
SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 28 4.7
SB_8937| Best HMM Match : RVP (HMM E-Value=0.029) 28 4.7
SB_4291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_59190| Best HMM Match : rve (HMM E-Value=6e-18) 28 6.2
SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_13078| Best HMM Match : RVP (HMM E-Value=0.039) 27 8.2
>SB_41291| Best HMM Match : Piwi (HMM E-Value=0)
Length = 598
Score = 58.0 bits (134), Expect = 5e-09
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Frame = +2
Query: 17 VMIVGADVTHPSPDQSNIPSIAAVTASMDTKCYIYNIELSIQTPKK-----EMIVQFEDI 181
V+I GADVTHP+P + IPSIAAV AS+D Y + QT K E+IV D+
Sbjct: 256 VIIFGADVTHPAPGDNGIPSIAAVVASLDRNASRYCARVRPQTHMKCKQAQEIIVDLADM 315
Query: 182 MVD-HFHAFKKSQGILPKKVFVFRDG 256
+ + +K+++ + P ++ +RDG
Sbjct: 316 VKELMIEFYKENKKMKPARIIFYRDG 341
Score = 55.2 bits (127), Expect = 4e-08
Identities = 38/86 (44%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Frame = +1
Query: 256 VSEGQFAEVMKSELTGLH---RAYQRVAGLNAK---PEVLFILVQKRHHTRFFLP-GNNA 414
VSEGQF + M L RA Q+ + K P + F++VQKRHH R F G +A
Sbjct: 342 VSEGQFQQTMFRRFQVLLEEVRAVQQACAMLEKDYQPLITFVVVQKRHHARLFAEEGRDA 401
Query: 415 RF---NVDPGTVVDRDIVHPRELDFY 483
R NV GT VD I HP E DFY
Sbjct: 402 RGKSRNVPAGTTVDTVICHPFEFDFY 427
>SB_35869| Best HMM Match : Piwi (HMM E-Value=4.6e-12)
Length = 243
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/80 (33%), Positives = 45/80 (56%)
Frame = +2
Query: 17 VMIVGADVTHPSPDQSNIPSIAAVTASMDTKCYIYNIELSIQTPKKEMIVQFEDIMVDHF 196
V+ +GADVTHP+ PS+AAV SMD Y + +QT ++E+I + ++ +
Sbjct: 53 VIFLGADVTHPAAGDDKRPSVAAVVGSMDAHPSRYYASVRVQTHRQEIIAELAAMVRELL 112
Query: 197 HAFKKSQGILPKKVFVFRDG 256
F +S P+++ +RDG
Sbjct: 113 VQFYRSTRHKPQRIVFYRDG 132
>SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33)
Length = 952
Score = 46.8 bits (106), Expect = 1e-05
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = +1
Query: 256 VSEGQFAEVMKSELTGLHRAYQRV-AGLNAKPEVLFILVQKRHHTRFFL--PGNNAR--F 420
V EGQ V++ E+ +A++ + G PE+ +VQKR RF+ PG R
Sbjct: 771 VGEGQIEAVIQHEIQQFLQAFRSINTGTLYNPELAVTIVQKRILPRFYAVRPGRGGRDYS 830
Query: 421 NVDPGTVVDRDIVHPRELDFYFGVSPSDQGT 513
N PGT+VD + P DF+ QGT
Sbjct: 831 NPPPGTLVDTVVTRPHCFDFFLVSQSVRQGT 861
>SB_17254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2
Query: 17 VMIVGADVTHPSPDQSNIPSIAAVTASMDTKCYIYNIELSIQTPKK 154
V+ +GADVTHP+ PS+AAV SMD Y + +QT ++
Sbjct: 53 VIFLGADVTHPAAGDDKRPSVAAVVGSMDAHPSRYYASVRVQTHRQ 98
>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
Length = 941
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +1
Query: 256 VSEGQFAEVMKSELTGLHRAYQRVAGLNAKPEVLFILVQKRHHTRFFL-----PGNNARF 420
V +GQ V++ E+ + +++ P+ F +V+KR TR F+ P
Sbjct: 609 VGDGQLRAVIEHEVPQILSTFKQFQD-GYDPKFGFTVVKKRIQTRLFMREARDPDMRNLM 667
Query: 421 NVDPGTVVDRDIVHPRELDFYFGVSPSDQGT 513
N PGTVVD+++ DF+ QGT
Sbjct: 668 NPPPGTVVDKEVTRSEWFDFFIVSQSVRQGT 698
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 119 YNIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKVFVFRDG 256
Y + Q +E++ + M +++ G+LP K+ VFRDG
Sbjct: 563 YYSRCTFQHSGQELVDGLKVCMTAALRQWQQINGVLPDKIIVFRDG 608
>SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 846
Score = 35.5 bits (78), Expect = 0.031
Identities = 18/81 (22%), Positives = 39/81 (48%)
Frame = +2
Query: 14 AVMIVGADVTHPSPDQSNIPSIAAVTASMDTKCYIYNIELSIQTPKKEMIVQFEDIMVDH 193
++M+ G DV H S+ + SM+ + ++ Q+P +E+I + +++
Sbjct: 310 SLMVCGIDVYHDKARGGR--SVGGLVCSMNRSLTRWYSDVCFQSPGQELIDGLKMLLIKG 367
Query: 194 FHAFKKSQGILPKKVFVFRDG 256
+ LP+++ V+RDG
Sbjct: 368 IRKWHDVNNALPERIIVYRDG 388
Score = 34.3 bits (75), Expect = 0.071
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +1
Query: 256 VSEGQFAEVMKSELTGLHRAYQRVAGLNAKPEVLFILVQKRHHTRFFLP---GNNARF-N 423
V +GQ V E+ + G + KP++ ++VQKR +TR F G R N
Sbjct: 389 VGDGQLKVVAGYEVQQFEECFASF-GESYKPKLAVLVVQKRINTRIFSAEGRGPQPRLGN 447
Query: 424 VDPGTVVDRDIVHPRELDFYFGVSPSDQGT 513
PG+V+D + DF+ QGT
Sbjct: 448 PGPGSVLDHTVTRKDWNDFFLVSQHVRQGT 477
>SB_3631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 63 VIYRVS-PP*PPRWIRNATYITSN*AYRHRRKR 158
VI +V PP P W+ +AT+ ++ AYR+RR R
Sbjct: 177 VINKVKYPPSPQDWMPSATHRLNDQAYRYRRPR 209
>SB_51018| Best HMM Match : RVT_1 (HMM E-Value=5.8e-17)
Length = 635
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 109 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 147
>SB_28788| Best HMM Match : RVP (HMM E-Value=0.028)
Length = 278
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 161 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 199
>SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
Length = 557
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 382 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 420
>SB_18007| Best HMM Match : RVP (HMM E-Value=0.047)
Length = 202
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 161 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 199
>SB_12598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 161 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 199
>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 1432
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 277 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 315
>SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 609
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 299 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 337
>SB_860| Best HMM Match : RVP (HMM E-Value=0.018)
Length = 260
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 143 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 181
>SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 800
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 109 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 147
>SB_46473| Best HMM Match : RVP (HMM E-Value=0.029)
Length = 304
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 161 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 199
>SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17)
Length = 890
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 109 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 147
>SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 649
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 333 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 371
>SB_8937| Best HMM Match : RVP (HMM E-Value=0.029)
Length = 303
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 161 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 199
>SB_4291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 57 NIDLSREQSKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 95
>SB_59190| Best HMM Match : rve (HMM E-Value=6e-18)
Length = 660
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 161 NIDLSREQGKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 199
>SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 298 SVHSSLPQQIDPQKPVTEHEHLLRQNPLTFLESMEMIHHYILK 170
S+ SS P P H H NP +L ++ HH I+K
Sbjct: 90 SLPSSQPTPSSPHHQKQSHHHF-HHNPYHYLRHSQLHHHPIIK 131
>SB_13078| Best HMM Match : RVP (HMM E-Value=0.039)
Length = 251
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 122 NIELSIQTPKKEMIVQFEDIMVDHFHAFKKSQGILPKKV 238
NI+LS + K + + ++ D+ F G+LP KV
Sbjct: 161 NIDLSREQIKSTTTLTSDPVLKDYLDCFSNKPGMLPNKV 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,659,107
Number of Sequences: 59808
Number of extensions: 401505
Number of successful extensions: 978
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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