Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20175
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.53 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.53 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   6.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 126 FSRQLRHDLRSIN*KEESSCFISNSTSNEC 37
           F R +R DL S   +EE SC I     N C
Sbjct: 134 FKRTVRKDL-SYACREEKSCIIDKRQRNRC 162


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 126 FSRQLRHDLRSIN*KEESSCFISNSTSNEC 37
           F R +R DL S   +EE SC I     N C
Sbjct: 134 FKRTVRKDL-SYACREEKSCIIDKRQRNRC 162


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 90  N*KEESSCFISNSTSNEC 37
           N  E ++C ISNS +N C
Sbjct: 165 NSPENNTCSISNSYTNGC 182


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 266 IDANGWHEEVVPRDRDGGHEPAEL 337
           ++ NG HEE  P + +   EP EL
Sbjct: 224 VEGNGVHEENSPLEDNIKCEPLEL 247


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 292 FFMPSISVNNCETYVFPLHRGFSL 221
           FF+ S+  +N ++Y  PL+   +L
Sbjct: 622 FFLSSMDESNTKSYEIPLYGKMTL 645


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 292 FFMPSISVNNCETYVFPLHRGFSL 221
           FF+ S+  +N ++Y  PL+   +L
Sbjct: 622 FFLSSMDESNTKSYEIPLYGKMTL 645


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 35  KHSLLVLLLMKQELSSF*LMDRRSCLSWRENRSQTSV 145
           KHS +V +LM ++ +S  L+    C +  +NR   ++
Sbjct: 115 KHSNIVKVLMIEQGASLSLITMELCGTTLQNRLDEAI 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,559
Number of Sequences: 438
Number of extensions: 2731
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)