Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20174
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    24   1.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.3  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   6.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.3  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 158 RCRCVVCKTRWCLYYIRSRSGIASKHSEGGHW 63
           R  C  C+ R CL    S+SG  S++    +W
Sbjct: 55  RTACKACRLRKCLLVGMSKSG--SRYGRRSNW 84


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 262 FPDLGNYVWVDEDGKNHESAEEQPMI 339
           +  L NY  VD   K  +  +EQP +
Sbjct: 501 YQQLSNYRNVDNSAKFKDGFQEQPNV 526


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +1

Query: 334 MIDLSDSVTEAMRSRFALQGCDVVTRQGEIETSPCYNRLPFH 459
           +I LS  V   +     + GCDVV          CY    F+
Sbjct: 212 IIHLSVFVYTLVSVILIIMGCDVVASNSRKTAEMCYKLQGFY 253


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 318 RFMVFSVFIHPNIV 277
           RF++    +HPNIV
Sbjct: 156 RFLIKVTILHPNIV 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,277
Number of Sequences: 336
Number of extensions: 3331
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)