Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20174
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    26   5.1  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    26   5.1  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   8.8  

>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 80  SVSKQYRSDYVYNKDTNAFYKLHTD 154
           S+   Y  DY  +K+  A Y +HTD
Sbjct: 76  SLKAYYGMDYYLHKNVKAVYVIHTD 100


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +1

Query: 313 ESAEEQPMIDLSDSVTE 363
           +S EE+P+IDL+DS+ E
Sbjct: 24  QSNEEKPLIDLNDSLDE 40


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = +3

Query: 90   SNTAPTTYIIKTPTRFTNYTPTALRYGTPRALALLREPS*WCRLQNRI*FSFIRCQEISR 269
            + T  TT    TPT  T  TPT     +   +A  +  S W   Q+ I +  I C  I+ 
Sbjct: 933  TTTKATTTFTPTPTTTTTPTPTTTSATSTNVIA--QCGSAWYDSQSYICYGNILCPIING 990

Query: 270  SGELCLG 290
            S  L  G
Sbjct: 991  SPLLACG 997


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,009
Number of Sequences: 5004
Number of extensions: 54930
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)