Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20174
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322...    32   0.42 
04_03_0051 + 10199702-10199839,10199869-10200642,10202481-102030...    29   3.9  
03_02_0191 - 6270591-6271364,6271458-6272168                           29   3.9  
07_01_0381 + 2846288-2846298,2846875-2847241                           28   5.2  
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142...    28   5.2  
08_02_0894 + 22346027-22347925                                         27   9.1  
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168...    27   9.1  

>01_01_0425 +
           3221303-3222602,3222710-3222928,3223010-3223114,
           3223274-3223403,3223524-3224464,3224971-3225257
          Length = 993

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +3

Query: 360 GSDEV*VRITRVRCGYSAGRNRNLTLLQPITFSFAKWKPLMRLTIRTXGFCYRVPIRGEH 539
           G D     +T +R    AG + N T+L   +F F +   L+RL +   GF  ++PI   H
Sbjct: 92  GLDPAVFNLTTLRNLSLAGNDFNRTVLP--SFGFQRLTKLLRLDLSEAGFFGQIPIGIAH 149

Query: 540 WKLLKISKVAYSW 578
            K L+   +++++
Sbjct: 150 LKNLRALDLSFNY 162


>04_03_0051 +
           10199702-10199839,10199869-10200642,10202481-10203077,
           10237046-10237159
          Length = 540

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 197 GAQLMVPASEQDIIQLHSMSRDFQIWG 277
           G +  VPA    ++ +H+M RD + WG
Sbjct: 389 GGRYAVPAGTMLLVNVHAMHRDARFWG 415


>03_02_0191 - 6270591-6271364,6271458-6272168
          Length = 494

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 28/93 (30%), Positives = 38/93 (40%)
 Frame = +1

Query: 322 EEQPMIDLSDSVTEAMRSRFALQGCDVVTRQGEIETSPCYNRLPFHLQSGSH*CALRYAL 501
           E Q  +DLS    EA  SR  L       R G   +S  +  L +    G      R   
Sbjct: 398 ELQKNLDLSAQHVEA--SRMTLH------RFGNTSSSSLWYELAYIEAKGRMRRGDRVWQ 449

Query: 502 XGFAIGYQYVESTGSCLRSPKXPIPGPKPYDEC 600
            GF  G++   +   CLR+ K P  G  P+D+C
Sbjct: 450 IGFGSGFKCNSAVWKCLRTVKTPADG--PWDDC 480


>07_01_0381 + 2846288-2846298,2846875-2847241
          Length = 125

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 390 RVRCGYSAGRNRNLTLLQPITFSFAKWKPLMRLTIRTXGFCYRVPIRGE 536
           R+ C +S+G   N   LQP   +     P +  T+ T    Y    RGE
Sbjct: 28  RINCSFSSGLGANPQALQPQIDAATSSSPPLEQTLATGELQYEGDSRGE 76


>03_01_0177 +
           1424773-1424850,1425307-1425391,1425498-1425577,
           1425771-1425898,1425962-1426049,1426187-1426277,
           1426712-1426881,1427151-1427438,1427527-1427643,
           1427924-1427976,1428029-1428090,1429042-1429118,
           1429269-1429322,1429417-1429476,1429581-1429658,
           1429805-1429851,1429933-1430051,1430280-1430364,
           1430443-1430557,1430662-1430784,1430869-1430969,
           1431346-1431475
          Length = 742

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 196 GSPVDGAGFRTGYNSASF---DVKRFPDLGNYVWVDEDGKNHESAEEQPMIDLSDSVTEA 366
           G P+  AG R   N  SF   D +          ++EDG   ESA +  +ID + +  + 
Sbjct: 254 GLPIKVAGHRWKGNKTSFGDSDEENSTQSNELSELEEDGDEEESANDNELIDANVNTVKE 313

Query: 367 M 369
           M
Sbjct: 314 M 314


>08_02_0894 + 22346027-22347925
          Length = 632

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 220 FRTGYNSASFD--VKRFPDLGNYVWVDEDGKNHESAEEQPMIDLSDSVTEAMRSR 378
           FR   +S + D  ++   DLG  + +  D  N  S+ E  ++D  DSV+  +  R
Sbjct: 93  FRHVLSSRALDLEIEALADLGGSLSISSDRSNSASSAELQVVDEDDSVSSLVGRR 147


>07_03_0851 +
           22012836-22014017,22016668-22016734,22016774-22016868,
           22017304-22017717
          Length = 585

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 274 GNYVWVDEDGKNHESAEEQPMIDLSDSVTEAMRSRFAL 387
           G  V VD D K      E+P++    +V + +R RF L
Sbjct: 116 GGRVLVDRDTKAETGGSEKPLVFTEIAVCDPLRRRFLL 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,673
Number of Sequences: 37544
Number of extensions: 387393
Number of successful extensions: 1108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)