Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20174
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_41371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_3713| Best HMM Match : Lectin_C (HMM E-Value=6.6e-10)               28   5.3  
SB_26484| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_6976| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_47656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 113 IRSRSGIASKHSEGGHWQSPKSRNK*KHSS 24
           IR+R G+A +  + G   SPK+R K K S+
Sbjct: 181 IRARHGLAPRDEKSGKGPSPKAREKAKKSA 210


>SB_41371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 113 IRSRSGIASKHSEGGHWQSPKSRNK*KHSS 24
           IR+R G+A +  + G   SPK+R K K S+
Sbjct: 181 IRARHGLAPRDEKSGKGPSPKAREKAKKSA 210


>SB_3713| Best HMM Match : Lectin_C (HMM E-Value=6.6e-10)
          Length = 202

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 44  FCFLAIASAPPPSVSKQYRSDYVYNKDTNAFYKLHTDSAKIW-DAKSSCTTEGAQL 208
           +C L +  A    V++   + +  + D NA Y L  D  K W DA+ SC  +GA+L
Sbjct: 86  YCGLGVVGAV---VTQGCPAGWQRSPDGNACYGLTLDK-KTWPDARDSCRAQGAEL 137


>SB_26484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +2

Query: 101 SDYVYNKDTNAFYKLHTDSAKIWDAKSSCTTEGAQLMVPASEQDIIQLHSMSRDFQIWGT 280
           S+Y+ N   +A  K  +   ++   K  C  E ++ +   S  DI+ LH ++ + Q +GT
Sbjct: 14  SNYMPNHKNDANSKTRS-GVEVSKQKLPCVIETSKSLSQDSNLDIV-LHDLTTEVQQYGT 71

Query: 281 MFGWMKTEKTMNLQRNSR 334
           +     T K + +  ++R
Sbjct: 72  IMQQSCTSKILTVNVDTR 89


>SB_6976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 529 RIGTL*QNPXVRIVRRINGFHFANEKVIGCSR 434
           RI  L ++P   IV +   +HFA+E V GCSR
Sbjct: 62  RICRLLKHP--NIVVKFTCYHFAHEMVYGCSR 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,257,030
Number of Sequences: 59808
Number of extensions: 427778
Number of successful extensions: 1031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)