Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20174
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39270.2 68417.m05561 leucine-rich repeat transmembrane prote...    29   2.5  
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote...    29   2.5  
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    29   3.3  
At3g45810.1 68416.m04958 ferric reductase-like transmembrane com...    29   3.3  
At5g65850.1 68418.m08287 F-box family protein                          28   5.7  
At3g12820.1 68416.m01599 myb family transcription factor (MYB10)...    28   5.7  
At1g18860.1 68414.m02348 WRKY family transcription factor contai...    27   7.6  

>At4g39270.2 68417.m05561 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 694

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 339 NHRLFLCRFMVFSVFIHPNIVPQIWKSLD 253
           N+  +L     FS F HP I+P + KSL+
Sbjct: 538 NNEAYLTELDFFSRFAHPRIIPFVGKSLE 566


>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 864

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 339 NHRLFLCRFMVFSVFIHPNIVPQIWKSLD 253
           N+  +L     FS F HP I+P + KSL+
Sbjct: 538 NNEAYLTELDFFSRFAHPRIIPFVGKSLE 566


>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 53  LAIASAPPPSVSKQYRSDYVYNKDTNAFYKLHTDSAKIWDAKSSCTT 193
           L +A+  P +    ++ D  + K T  FY+ HTD   I+     C +
Sbjct: 427 LVVATRGPGNEEGTFQCDACHRKGTGFFYEHHTDQENIFMLDIHCAS 473


>At3g45810.1 68416.m04958 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 912

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 190 Y*GSPVDGAGFRTGYNSASFDVKRFPDLGNYVWVDEDGKNHE 315
           Y GS V+G G   G  S S   ++FP    + WV  +  + E
Sbjct: 751 YGGSSVNGGGSVNGGGSVSGGGRKFPQRAYFYWVTREQASFE 792


>At5g65850.1 68418.m08287 F-box family protein
          Length = 392

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 403 VTRQGEIETSPCYNRLPF 456
           VTR  EI  SPCY  +PF
Sbjct: 330 VTRTNEIMLSPCYQTVPF 347


>At3g12820.1 68416.m01599 myb family transcription factor (MYB10)
           similar to myb factor GI:1945279 from [Oryza sativa]
          Length = 239

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 185 CTTEGAQLMVPASEQDIIQLHSMSRDFQIWGTM 283
           C  + +Q+  P S+ D +Q H  S D + W  +
Sbjct: 187 CLFDDSQVPPPISKPDSLQTHGKSSDHEFWSRL 219


>At1g18860.1 68414.m02348 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 480

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 39  FVSAFWRLPVPPLRVFRSNTAPTTYIIKTPTRFTNYTPTALRYG 170
           F+S   R   PP  V RSN+ P+T +      F+N T T + +G
Sbjct: 328 FLSMLNRFSSPPSNVSRSNSYPSTNL-----NFSNNTNTLMNWG 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,036,871
Number of Sequences: 28952
Number of extensions: 296011
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)