Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20170
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584...    28   3.9  
02_05_1127 + 34292894-34293284,34293948-34295443                       28   5.1  
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    28   5.1  
06_01_0198 + 1529190-1530371                                           27   8.9  
01_02_0027 - 10331614-10331737,10332435-10332526,10332977-103330...    27   8.9  

>01_01_0758 +
           5843702-5843874,5844021-5844083,5844174-5844290,
           5847180-5847945
          Length = 372

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 395 LALKLGPTLDPANERLAYGDGKEKNSDLHQLEVHYLVG 508
           +AL  GP L P N   A+G G E  S        ++ G
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGSSGAATRARWVTG 183


>02_05_1127 + 34292894-34293284,34293948-34295443
          Length = 628

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 112 AVLTKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPS 225
           A  T++SRR  TT++S  T +A + R+ +  ++  APS
Sbjct: 8   AQTTEDSRRRATTSTSTPTCSAATSRSASRSSRPLAPS 45


>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
            22436458-22436574,22436702-22436803,22437431-22437487,
            22437976-22438044,22438423-22438533,22438597-22438791,
            22439023-22439121,22439656-22440222,22440344-22440568,
            22441036-22441338,22441640-22441707,22441947-22442105,
            22442230-22442475,22442549-22442680,22443243-22443351,
            22444131-22444283,22444359-22444601,22444695-22444862,
            22445013-22445156,22445238-22445699,22446495-22446791,
            22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -1

Query: 263  DFRNDQVVNYILDDGALALVLVFQALTDSAVVVTGEDAVVQFLLEFFVRTAHAYRGHFSD 84
            D  N   +++ +   A  L+ + + +TD AVVV G     +  L   +   H   G    
Sbjct: 1526 DVENSNQISFSVQSVADLLLKLIRNITDGAVVVVGYSMGARIALHMALNQNHKISGAVII 1585

Query: 83   AGAXG 69
            +G+ G
Sbjct: 1586 SGSPG 1590


>06_01_0198 + 1529190-1530371
          Length = 393

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 464 FPYHRRMQVSRSRDQEWGRA 405
           F +++R+ VSRS D E+GRA
Sbjct: 286 FCWYQRLHVSRSPDTEYGRA 305


>01_02_0027 -
           10331614-10331737,10332435-10332526,10332977-10333055,
           10333110-10333408,10335310-10335588
          Length = 290

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 409 RPHS*SRERETCIRRW*G 462
           R HS  RER+ C+R+W G
Sbjct: 26  RLHSGERERKLCVRKWMG 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,301,702
Number of Sequences: 37544
Number of extensions: 258373
Number of successful extensions: 684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)