Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20170
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)                      29   1.7  
SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)                    29   3.0  
SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_46895| Best HMM Match : rve (HMM E-Value=1.6e-25)                   27   6.9  
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              23   9.6  

>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
          Length = 249

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 395 LALKLGPTLDPANERLAYGD 454
           +++KL P +DP   RLAYGD
Sbjct: 6   ISVKLPPDIDPTKARLAYGD 25


>SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)
          Length = 1128

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 317 QCAVRCRPXACSSTPW--CSDFRNDQVVNYILDD 222
           QC +R RP A +S  W   S F N   ++ +LDD
Sbjct: 893 QCTMRARPLAGASRDWVTSSGFSNPASLSCVLDD 926


>SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 188 ELGIREPRQGLHHPECS*QPDHYGSRNTMEY 280
           + GI  P+ G+H P+C  Q   + S++ M Y
Sbjct: 542 QCGIHSPQCGIHSPQCGIQSPMWYSQSPMWY 572


>SB_46895| Best HMM Match : rve (HMM E-Value=1.6e-25)
          Length = 329

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 1   LESDRKRQLS**NFSXXSRCACSPXAPASLKCPR*A*AVLTKNSRRNCTTASSPVTT 171
           +E+++ RQ+     +  S     P AP S + P    AVL   S    T   SP+TT
Sbjct: 257 VETEKGRQIRRYRSALVSAAPKKPQAPTSEEKPTTPPAVLPAKSDNVATATPSPITT 313


>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 22.6 bits (46), Expect(2) = 9.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 144 YNSILTGDYDSAVRQSLEYENQGK 215
           Y   LTG +   +RQS E EN  K
Sbjct: 747 YAKQLTGMFQWCIRQSAEVENNIK 770



 Score = 22.6 bits (46), Expect(2) = 9.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 318 PESTSPITLDSSWP 359
           PES+ P+ L  +WP
Sbjct: 785 PESSEPLELPPTWP 798


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,030,439
Number of Sequences: 59808
Number of extensions: 289206
Number of successful extensions: 703
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)