Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20170
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   3.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   10.0 

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 310 LSVADPQLVAVLHGVPTSVMIRLLTTFWMMEPLPW 206
           LS  DP +V     +P  ++ R L  F+  E LP+
Sbjct: 320 LSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPF 354


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 310 LSVADPQLVAVLHGVPTSVMIRLLTTFWMMEPLPW 206
           LS  DP +V     +P  ++ R L  F+  E LP+
Sbjct: 26  LSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPF 60


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 222 WSPCLGSRIPSSDGQRCRSHR 160
           + P LG  +  S GQ+ R+HR
Sbjct: 118 FKPWLGDGLLISTGQKWRNHR 138


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 182  PSELGIREPRQGLHHPECS*QPDHYGSRNTM 274
            P+     E + G  + +     DHYGSR ++
Sbjct: 1810 PANCAPEEDQYGSQYGQYGAPYDHYGSRGSV 1840


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +3

Query: 444 HTAMVRKRTATSISWKFITL 503
           HT M+   T     WK++ +
Sbjct: 497 HTKMLEDSTKVKEDWKYVAM 516


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +3

Query: 444 HTAMVRKRTATSISWKFITL 503
           HT M+   T     WK++ +
Sbjct: 497 HTKMLEDSTKVKEDWKYVAM 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,205
Number of Sequences: 438
Number of extensions: 2498
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)