Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20167
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 27 1.9
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 27 2.5
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.2
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 4.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 4.3
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 5.7
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 5.7
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 25 9.9
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 25 9.9
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 25 9.9
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 25 9.9
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 25 9.9
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 245 LSHMNQDLPQGVQAMSSWLNVNMVLEISER 334
+SH +DL +Q + SW+N +M I ER
Sbjct: 223 VSHNRKDLTVALQEIESWINKDMGPLIDER 252
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 26.6 bits (56), Expect = 2.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 122 CHLPSILACREASQTWV 72
CH P I+AC S+ W+
Sbjct: 676 CHRPLIIACHAESRNWI 692
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 17 TPLPATEKEMDITAKQIEQPTSGSPP 94
TP T+KE D + K+ E T SPP
Sbjct: 25 TPSEFTKKEEDSSTKESELQTRSSPP 50
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 310 HGSGDFGAALEELKKNVGYLNIISRNYKDN 399
H +F EE +K GY N + RN +DN
Sbjct: 609 HFVAEFLGETEEAEKLAGYENAMLRNLEDN 638
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/54 (22%), Positives = 24/54 (44%)
Frame = +2
Query: 32 TEKEMDITAKQIEQPTSGSPPDKPKLMEGGNYIREGRDSTKSTWLLISPAAPDE 193
++ + T ++++ +G PP PK + ++I+ T P PDE
Sbjct: 76 SQAQRGATLQELDYNKAGDPPILPKQAKDDHHIKRSSSETADFTPFRIPINPDE 129
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 527 RSPVNRTVNPG*SESSSA 474
R P N TVNPG S S SA
Sbjct: 210 RCPFNLTVNPGGSSSGSA 227
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 5.7
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Frame = +1
Query: 208 QIFRHFLFSWSQPQPHESRSSTRRPGYEFMVECEHGSGDFGAAL----EELKKNVGYLNI 375
Q R L + QP P S S T G + V SG F + +L+K++ LN
Sbjct: 1166 QEMRDLLHNIRQPLPRSSSSKTFGEGIKKSVRKFSMSGSFKRVVTPLGTQLRKDI--LND 1223
Query: 376 ISRNYKDNRSAVPWFPRRIRDLDRFANQILSYGAELD 486
+ ++ S FP+ + L F N + Y D
Sbjct: 1224 SITDMENTSSFTASFPQSDQALQYFDNFTVQYAEAKD 1260
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 376 ISRNYKDNRSAVPWFPRRIRDLDRFANQILSYGAE-LDSDHPG 501
I+RNY D + +PW R + + D L + E LD DH G
Sbjct: 512 ITRNYLDWITQLPWGKRSVENFD------LDHAKEVLDRDHYG 548
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 71 QPTSGSPPDKPKLMEGGNYIREGR 142
Q G PPD+ +L+ G + +GR
Sbjct: 31 QDKEGIPPDQQRLIFAGKQLEDGR 54
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 71 QPTSGSPPDKPKLMEGGNYIREGR 142
Q G PPD+ +L+ G + +GR
Sbjct: 31 QDKEGIPPDQQRLIFAGKQLEDGR 54
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 71 QPTSGSPPDKPKLMEGGNYIREGR 142
Q G PPD+ +L+ G + +GR
Sbjct: 31 QDKEGIPPDQQRLIFAGKQLEDGR 54
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 71 QPTSGSPPDKPKLMEGGNYIREGR 142
Q G PPD+ +L+ G + +GR
Sbjct: 31 QDKEGIPPDQQRLIFAGKQLEDGR 54
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 71 QPTSGSPPDKPKLMEGGNYIREGR 142
Q G PPD+ +L+ G + +GR
Sbjct: 107 QDKEGIPPDQQRLIFAGKQLEDGR 130
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 71 QPTSGSPPDKPKLMEGGNYIREGR 142
Q G PPD+ +L+ G + +GR
Sbjct: 183 QDKEGIPPDQQRLIFAGKQLEDGR 206
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 71 QPTSGSPPDKPKLMEGGNYIREGR 142
Q G PPD+ +L+ G + +GR
Sbjct: 259 QDKEGIPPDQQRLIFAGKQLEDGR 282
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 71 QPTSGSPPDKPKLMEGGNYIREGR 142
Q G PPD+ +L+ G + +GR
Sbjct: 335 QDKEGIPPDQQRLIFAGKQLEDGR 358
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 71 QPTSGSPPDKPKLMEGGNYIREGR 142
Q G PPD+ +L+ G + +GR
Sbjct: 31 QDKEGIPPDQQRLIFAGKQLEDGR 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,933
Number of Sequences: 5004
Number of extensions: 54446
Number of successful extensions: 168
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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