Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20167
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168...    31   0.62 
12_01_0082 - 662016-663215                                             29   1.9  
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365...    29   1.9  
07_03_1680 + 28620244-28620480,28620556-28620732,28620819-286209...    27   7.6  
04_01_0451 + 5845249-5846133,5846220-5846509,5855590-5856060,585...    27   7.6  
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904...    27   7.6  

>03_05_0761 -
           27515441-27515650,27515967-27516074,27516666-27516839,
           27517185-27517469,27517688-27517920,27519422-27520139
          Length = 575

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +1

Query: 295 MVECEHGSGDFGAALEELKKNVGYLNIISRNYKDNRSAVPW 417
           +V+CE   G++G+ L ELKK + +LN ++   + NR ++ W
Sbjct: 243 LVKCEQWGGNYGSKLNELKK-MWFLNRVAG--QRNRGSMDW 280


>12_01_0082 - 662016-663215
          Length = 399

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 397 NRSAVPWF-PRRIRDLDRFANQILSYGAELDSDHPGFTVLFTGDRRKYFA 543
           N    PW   RR R+L+ FA+ + +    L +DH G T++F  D    FA
Sbjct: 77  NFEPTPWDGQRRYRNLE-FASLLGNENRILFADHSGHTIVFDADSSTVFA 125


>11_04_0272 -
           15631598-15631898,15633162-15633291,15636394-15636544,
           15636632-15636730,15636912-15637063,15637079-15637301
          Length = 351

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 145 ITTLADVVATFHQFWLVGRRARRGLFNLLRRDV-HFFFCCWKRRV 14
           +T   +VVA FHQF L+G     G  ++ ++D+   F  C++R++
Sbjct: 119 LTIFREVVAMFHQFVLIG---GEGALSVEKQDILGTFVLCYRRQI 160


>07_03_1680 +
           28620244-28620480,28620556-28620732,28620819-28620984,
           28621099-28621493
          Length = 324

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 140 RDSTKSTWLLISPAAPDEAGSLARYLGIFSSHGVNLSHM 256
           RDST ++  L +   P  + SLA  +G FS  G++ + M
Sbjct: 151 RDSTTASEALANTDLPAPSSSLAELIGNFSRKGLDATDM 189


>04_01_0451 +
           5845249-5846133,5846220-5846509,5855590-5856060,
           5856898-5857063,5857100-5857498,5858031-5858075
          Length = 751

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 238 SQPQPHESRSSTRRPGYEFMVECEHGSGDFGAALEELKKNVG 363
           S+P+P    SS+   GY+F ++   G G F      LK+  G
Sbjct: 381 SRPRPKIRTSSSEEEGYKFYLDYAKGKG-FSVRKNNLKRKDG 421


>01_07_0298 -
           42586007-42589742,42590167-42590280,42590295-42590437,
           42591174-42591347
          Length = 1388

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 209 RYLGIFSSHGVNLSHMNQDLPQGVQAMSSWLNVNMVLEISER 334
           RY GI S++G+ L+ + +DL +   A+    NV+   E S R
Sbjct: 646 RYCGILSAYGMGLADVIEDLQEPYSAI---YNVDSAAEASRR 684


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,530,339
Number of Sequences: 37544
Number of extensions: 404215
Number of successful extensions: 1268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)