Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20167
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3716| Best HMM Match : No HMM Matches (HMM E-Value=.)               75   3e-14
SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)             30   1.1  
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12)           29   3.4  
SB_54958| Best HMM Match : NUDE_C (HMM E-Value=9.8)                    28   4.5  
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      28   4.5  
SB_33727| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_5389| Best HMM Match : UPF0020 (HMM E-Value=9.7e-36)                27   7.8  
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  

>SB_3716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = +1

Query: 256 ESRSSTR-RPGYEFMVECE--HGSGDFGAALEELKKNVGYLNIISRNYKDNRSAVPWFPR 426
           ESR S   +  Y+F  +CE  HG+      ++ LKK    + ++S    D++ +VPWFPR
Sbjct: 5   ESRPSKACKTRYDFFADCEGLHGAS-LNHFVDALKKRAVNITVLS----DDKVSVPWFPR 59

Query: 427 RIRDLDRFANQILSYGAELDSDHP 498
           +I DLD+FA+++LSYGAELDSDHP
Sbjct: 60  KISDLDKFADRVLSYGAELDSDHP 83


>SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 134 EGRDSTKSTWLLISPAAPDEAGSLARYLGIFSSHGVNLSHM 256
           EG    K+T ++ S    +E G+LAR L +F  H VN++H+
Sbjct: 23  EGESEKKATTVVFS--LNEEVGALARALKLFEDHHVNMTHI 61


>SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)
          Length = 1076

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 128 IREGRDSTKSTWLLISPAAPDEAGSLARYLGIFSSHGVNLSHMNQDLP 271
           + EGR       LL++  APDE  S ARY+GI  + G ++  ++++ P
Sbjct: 9   LHEGRIRQDDNQLLVAQYAPDEYLS-ARYIGIGKTMGPDVRWVDKEKP 55


>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 499 QGDQSPVRHRMR-GSGWRSDLSRGYDVGTKEQRIDYLYSFSK 377
           +G Q PV  R   G+ W S+  + Y++GT++ R + LY  SK
Sbjct: 395 RGMQGPVGLRGTVGARWTSEALQSYELGTQKTRENRLYRSSK 436


>SB_53776| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.5e-12)
          Length = 640

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 157 NLASDFTSSTR-RG-WLVSQIFRHFLFSWSQPQPHESRSSTRRPGYEFMVEC 306
           NL+S  +S  R  G W       HF  +  +P+P+      RRPG +   EC
Sbjct: 389 NLSSSSSSPPRDEGLWCHQANGEHFYKAVKKPRPYPKAKRRRRPGSQSSAEC 440


>SB_54958| Best HMM Match : NUDE_C (HMM E-Value=9.8)
          Length = 267

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +2

Query: 128 IREGRDSTKSTWLLISPAAP----DEAGSLARYLGIFSSHGVNLSHMNQDLPQGVQAMSS 295
           +RE     + TWL +SP  P    D   S  +YL   S  G NLS +   L   +++++S
Sbjct: 71  LRESDSEEEDTWLYVSPVRPPTPADRKVSPYKYLK-HSIDGTNLSKVRGSLMAKLESIAS 129


>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +2

Query: 17  TPLPATEKEMDITAKQIEQPTSGSPPDKPKLMEGGNYIREGRDSTKSTWLLISPAAPDEA 196
           T  PA E   +    + ++  S S  D  + +     + +G+D+ K    L+SP +P  +
Sbjct: 528 TETPADEPGTNADPTRAQKGRSESVYDLKEFLTMARTLPKGKDAGKQNAHLLSPKSPKPS 587

Query: 197 GSLARYLGIF 226
           GS  +   I+
Sbjct: 588 GSQTKRESIY 597


>SB_33727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +2

Query: 128 IREGRDSTKSTWLLISPAAP----DEAGSLARYLGIFSSHGVNLSHMNQDLPQGVQAMSS 295
           +RE     + TWL +SP  P    D   S  +YL   S  G NLS +   L   +++++S
Sbjct: 71  LRESDSEEEDTWLYVSPVRPPTPADRKVSPYKYLK-HSIDGTNLSKVRGSLMAKLESIAS 129


>SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 383 LEIIFRYPTFFFSSSRAAP---KSPEPCSHSTMNS*P 282
           +EI +RY T+FF SSR  P    + +P S S   + P
Sbjct: 30  IEIWYRYATWFFWSSRGYPVVSLASQPASQSVSRATP 66


>SB_5389| Best HMM Match : UPF0020 (HMM E-Value=9.7e-36)
          Length = 392

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 146 STKSTWLLISPAAPDEAGSLARYLGIFSSHGVNLSHMNQDLPQGVQAMSSWLNVNMVLEI 325
           S ++ W L  P A DE   LAR     +   V L+H  + L + +Q M  W  V + L +
Sbjct: 318 SKQNNWSLY-PQALDE---LARVCPPKTGRAVILTHDKKALAKTLQRMQKWWKVKLTLWV 373

Query: 326 SERPLKS 346
           +   L+S
Sbjct: 374 NMGGLQS 380


>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 226 LFSWSQPQPHESRSSTRRPGYE 291
           +FS +  +PHESR  T +PG +
Sbjct: 607 IFSSAADEPHESRKDTLKPGLD 628


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,219,411
Number of Sequences: 59808
Number of extensions: 402626
Number of successful extensions: 1353
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)