Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20167
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    46   2e-07
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.39 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   6.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.4  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 46.4 bits (105), Expect = 2e-07
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +1

Query: 412 PWFPRRIRDLDRFANQILSYGAELDSDHPGFTVLFTGDRRKYFADIAY 555
           PWFPR   DLD   + +  +  +LD +HPGF       RRK+ A+IA+
Sbjct: 172 PWFPRHASDLDNCNHLMTKFEPDLDMNHPGFADKEYRARRKFIAEIAF 219


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 32  TEKEMDITAKQIEQPTSGSPPDKP 103
           T+++  I  +Q +QP+SG+P  +P
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQP 25


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 198 PASSGAAGEIRSQVDLVESRPSRM*LPPSINFGLSGGEPDV 76
           P SS    E ++++DL+E  P R     S    LSG E DV
Sbjct: 400 PESSSNLQE-KTKIDLLEIPPIRKISDCSTTSSLSGDESDV 439


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -1

Query: 123 LPPSINFGLSGGEPDVGCSICFAVMSISFSVAGRGVCS 10
           +PP++   L+GG  ++G  +C + +S+   +    + S
Sbjct: 91  MPPAVLLQLTGGTWELGPMLCDSWVSLDILLCTASILS 128



 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 383 ETIKIIDPLFLGSHVVSAT*IASPTRSSHTVPNWTLITL 499
           +T      ++  +H VS+      TR+ + +PNWT + L
Sbjct: 4   QTANYYGDVYQWNHTVSSG--ERDTRTEYYLPNWTDLVL 40


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 199 LVSQIFRHFLFSWSQPQPHESRSSTRRPGYEF 294
           L  +I  +FL  + + QP  S+S  + PG +F
Sbjct: 423 LYQKILSYFL-RYKKLQPQYSQSELQMPGVKF 453


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 352 KNVGYLNIISRNYKDNRSAVPWFPRRIRDLDR 447
           KN  YL++I RN       + W      DL++
Sbjct: 367 KNAKYLDVIERNSGATDKIIRWCTWSEGDLEK 398


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 352 KNVGYLNIISRNYKDNRSAVPWFPRRIRDLDR 447
           KN  YL++I RN       + W      DL++
Sbjct: 367 KNAKYLDVIERNSGATDKIIRWCTWSEGDLEK 398


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 352 KNVGYLNIISRNYKDNRSAVPWFPRRIRDLDR 447
           KN  YL++I RN       + W      DL++
Sbjct: 367 KNAKYLDVIERNSGATDKIIRWCTWSEGDLEK 398


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 199 LVSQIFRHFLFSWSQPQPHESRSSTRRPGYEF 294
           L   I  +FL  + + QP  S+S  + PG +F
Sbjct: 423 LYQNILSYFL-RYKKLQPQYSQSELQMPGVKF 453


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 320 PEPCSHSTMN 291
           P PC+H+T N
Sbjct: 432 PNPCTHTTTN 441


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 320 PEPCSHSTMN 291
           P PC+H+T N
Sbjct: 418 PNPCTHTTTN 427


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 320 PEPCSHSTMN 291
           P PC+H+T N
Sbjct: 452 PNPCTHTTTN 461


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 320 PEPCSHSTMN 291
           P PC+H+T N
Sbjct: 401 PNPCTHTTTN 410


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 88  RARRGLFNLLRRDVHFFFCCW 26
           ++R+ +  +L   V  FF CW
Sbjct: 263 QSRKSVIKMLSAVVILFFICW 283


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 410 FLGSHVVSAT*IASPTRSSHTVPNWTL 490
           FLG++ +  T  ASPT    T  + T+
Sbjct: 372 FLGNYSLVPTTTASPTTEPSTTTSTTI 398


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 241 QPQPHESRSSTRRPGYEFMVECEHG 315
           +P P+ES+   R P    M   +HG
Sbjct: 133 RPLPNESQLIKRHPIVTIMGHVDHG 157


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/44 (20%), Positives = 21/44 (47%)
 Frame = -1

Query: 195 ASSGAAGEIRSQVDLVESRPSRM*LPPSINFGLSGGEPDVGCSI 64
           ++S   GE  +++ L+ + P  + + P +     GG  +  C +
Sbjct: 311 SASNPGGEASAEIRLIVTAPLHVEVTPPLLSVHLGGNAEFRCEV 354


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/44 (20%), Positives = 21/44 (47%)
 Frame = -1

Query: 195 ASSGAAGEIRSQVDLVESRPSRM*LPPSINFGLSGGEPDVGCSI 64
           ++S   GE  +++ L+ + P  + + P +     GG  +  C +
Sbjct: 311 SASNPGGEASAEIRLIVTAPLHVEVTPPLLSVHLGGNAEFRCEV 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,969
Number of Sequences: 438
Number of extensions: 3779
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)