Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20167
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26460.1 68415.m03175 RED family protein similar to Red prote...    32   0.30 
At3g48620.1 68416.m05308 chloroplast outer membrane protein-rela...    31   0.68 
At1g28380.1 68414.m03487 expressed protein                             29   2.8  
At1g23300.1 68414.m02914 MATE efflux family protein similar to r...    29   2.8  
At3g45830.1 68416.m04960 expressed protein                             28   3.6  
At3g03773.1 68416.m00384 expressed protein                             28   3.6  
At3g26590.1 68416.m03319 MATE efflux family protein similar to r...    27   6.4  
At3g13390.1 68416.m01684 multi-copper oxidase type I family prot...    27   8.4  
At1g55570.1 68414.m06360 multi-copper oxidase type I family prot...    27   8.4  

>At2g26460.1 68415.m03175 RED family protein similar to Red protein
           (RER protein) (Swiss-Prot:Q9Z1M8) [Mus musculus]
          Length = 585

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 20  PLPATEKEMDITAKQIEQPTSGSPPDKPKLMEGGNYIREGRDSTKS 157
           PLP     +D++ KQ E P + +  D   + EG +Y   G+D T+S
Sbjct: 266 PLPPGINHLDLSTKQEEPPVARTDDDDIFVGEGVDYTVPGKDVTQS 311


>At3g48620.1 68416.m05308 chloroplast outer membrane protein-related
           weak similarity to chloroplastic outer envelope membrane
           protein (OEP75) [Pisum sativum] GI:633607
          Length = 328

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +2

Query: 110 MEGGNYIREGRDS-TKSTWLLISPAAPDEAGSLARYLGIFSSHGVNLSHMNQDLPQGVQA 286
           M  G Y R GR S      LL S    D    L +      +    LSH +  + QG+  
Sbjct: 46  MTDGRYQRSGRISYNMQNSLLCSGNTHDSMVVLKQESRFAKATDQGLSHFSMQIEQGIPV 105

Query: 287 MSSWLNVN 310
           +S+WL  N
Sbjct: 106 VSNWLIFN 113


>At1g28380.1 68414.m03487 expressed protein
          Length = 612

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +2

Query: 17  TPLPATEK-EMDITAKQIEQPTSGSPPDKPKLME--GGNYIREGRDSTKSTWLLISPAAP 187
           +P PAT K +  I       P   SPP KPKL+       +  G +     W++      
Sbjct: 529 SPNPATTKPQSKIDINSAVYPRGPSPPVKPKLLSLVDTKEVMRGPEEQPGYWVVTGAKLC 588

Query: 188 DEAGSLA 208
            EAG ++
Sbjct: 589 VEAGKIS 595


>At1g23300.1 68414.m02914 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 515

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 35  EKEMDITAKQIEQPTSGSPPDKPKLMEGGNYIREGRDSTKSTWLLISPA 181
           + E  I+++Q  +  + S  D P +  G ++IR+    +K  W L  PA
Sbjct: 7   DHEDTISSEQEHRAHTKSDTDMPPISGGRDFIRQFAAESKKLWWLAGPA 55


>At3g45830.1 68416.m04960 expressed protein
          Length = 1298

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 292 FMVECEHGSGDFGAALEELKKNVGYLNIISRNYKDN 399
           F +E  HGSGD  ++ EE +KN    N+ S +  D+
Sbjct: 13  FDLEYSHGSGDSMSSYEERRKNSVVNNVDSEDEDDD 48


>At3g03773.1 68416.m00384 expressed protein
          Length = 150

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 325 FGAALEELKKNVGYLNIISRNYKDNRSAVPWFPRRIRDLDRFANQI 462
           +G  + E +KNVG  NII    K+ RS   W+ R ++  ++ A  I
Sbjct: 57  YGKIMTEYRKNVGLRNIIFSIQKEERS---WWTRLLKSEEKPAPYI 99


>At3g26590.1 68416.m03319 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 500

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +2

Query: 86  SPPDKPKLMEGGNYIREGRDSTKSTWLLISPAAPDEAG--SLARYLGIFSSH 235
           S  D P +   G ++RE    TK  W L  PA        SL     +F+ H
Sbjct: 25  SVDDIPPITTVGGFVREFNVETKKLWYLAGPAIFTSVNQYSLGAITQVFAGH 76


>At3g13390.1 68416.m01684 multi-copper oxidase type I family protein
           nearly identical to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Multicopper
           oxidase domain PF00394
          Length = 554

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 7   LRTHASSSNRKRNGHHGEAN*TTHVWLASRQAKIDGR 117
           L   A+  N + + H+G+ N T  + L + Q K+DG+
Sbjct: 331 LTASAARPNPQGSYHYGKINITRTIKLVNTQGKVDGK 367


>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein
           nearly identical to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Multicopper
           oxidase domain PF00394
          Length = 555

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 7   LRTHASSSNRKRNGHHGEAN*TTHVWLASRQAKIDGR 117
           L   A+  N + + H+G+ N T  + L + Q K+DG+
Sbjct: 332 LTASAARPNPQGSYHYGKINITRTIKLVNTQGKVDGK 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,114
Number of Sequences: 28952
Number of extensions: 304494
Number of successful extensions: 992
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)