Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20166
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   3.1  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   3.1  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   4.1  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 443 DGNVAVFFAGFSTGF 399
           +G VA FF  FS GF
Sbjct: 322 EGEVAFFFTQFSEGF 336


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 443 DGNVAVFFAGFSTGF 399
           +G VA FF  FS GF
Sbjct: 322 EGEVAFFFTQFSEGF 336


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 443 DGNVAVFFAGFSTGF 399
           +G VA FF  FS GF
Sbjct: 322 EGEVAFFFTQFSEGF 336


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 443 DGNVAVFFAGFSTGF 399
           +G VA FF  FS GF
Sbjct: 322 EGEVAFFFTQFSEGF 336


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 482 KWNPHFHSTFLYW 444
           K NP F   FLYW
Sbjct: 430 KNNPEFLDAFLYW 442


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 224 REVCCFRIMTYVVYF*KRMRSSFLTNIFIL 135
           REVC F +  Y       +  +FLT + IL
Sbjct: 167 REVCTFVVQVYPRLVVNTINLTFLTLLMIL 196


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 203 IMTYVVYF*KRMRSSFLTNIFILTSSTT 120
           + TY+V F +  +SS   N ++LT+++T
Sbjct: 374 VTTYLVIFIQFDQSSNSRNNYVLTNNST 401


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,567
Number of Sequences: 336
Number of extensions: 2368
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)