Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20166
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 30 0.26
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 28 0.79
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 28 1.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 3.2
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 3.2
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 4.2
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 4.2
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 26 4.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.6
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 7.3
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 7.3
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 7.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.7
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 9.7
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 25 9.7
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 29.9 bits (64), Expect = 0.26
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 395 FNSRASPQSPSDIKRESRSFNTSLSSPR 312
F+SR+ SP ++RESRSF SL+ R
Sbjct: 511 FHSRSVDASPKAVRRESRSFFPSLTRKR 538
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 28.3 bits (60), Expect = 0.79
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -2
Query: 475 ILTFIPHFFIGTVMSQFSSLVFLQVSILIRVLLHNLHLTSNAKVGPL-TLLYLHRA*SVD 299
+L +I FF+ + +S+FS V+ SI L + LH + K +LLY+ + D
Sbjct: 29 VLFWILRFFVRSGLSKFSKFVYAFASISSGFLHYQLHRAAAPKYDARGSLLYVGQ----D 84
Query: 298 TLTQEIIRIMKKFSLYKTIII 236
L + + M + + I+I
Sbjct: 85 LLQEGVTSYMVDYMYFSWILI 105
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 174 FLKVYHISHYSETTDFASKFNIIIVLYSENF 266
FLK+ I Y+E DF+S I ++ ENF
Sbjct: 882 FLKLCSIPFYAEHIDFSSYVQISLLCQDENF 912
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -1
Query: 170 MRSSFLTNIFILTSSTTF---LPISKKIPDPINPFSNNSTF 57
+R+ +N+F L +S T I K+ PD +PFS S F
Sbjct: 361 LRTPSESNLFSLIASITSDINEQIQKRFPDATSPFSGESMF 401
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 3.2
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = -1
Query: 293 DPRNHSYYEKVLTVQDNNNIKLRREVCCFRIMTYVVYF*KRMRSSFLTNIFILTSSTTFL 114
D +H + L + NI RE+C + Y +Y K + S+ NI S+ L
Sbjct: 114 DLLSHDSLQNSLALHTIANIG-GRELC--ETVYYDIY--KLLMSASNENIVRQKSALALL 168
Query: 113 PISKKIPDPINP 78
I +K PD INP
Sbjct: 169 HIYRKFPDLINP 180
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.8 bits (54), Expect = 4.2
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = -1
Query: 536 N*G*VPTSRS*CQN*SMSKWNPHFHSTFLYWDGNVAVFFA--GFSTGFDFNSRASPQSPS 363
N G V T + C S S NP +FL GN +++ A G ++G + P
Sbjct: 958 NKGTVATYKDICSLASESG-NPDLIYSFLSIAGNSSLWQARKGLASGISYLG-----IPE 1011
Query: 362 DIKRESRSFNTSLSSPRL 309
D KR++ SF+TS SS L
Sbjct: 1012 DQKRKTFSFDTSKSSSLL 1029
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +1
Query: 286 LGSRYRPIKRGEDREVLKDRLSRLMSDGDCGEARELKSKPVEKPAKKTA 432
LGS RP+ + ++ +D L ++ + D E S ++ P + A
Sbjct: 591 LGSNVRPVSERYNEQIAEDVLCDILDEIDYAEDPNTSSVTIDVPQEPNA 639
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 404 GFDFNSRASPQSPSDIKRESRSFNTSLSSPRLIG 303
GF+ S +SP PS ++ + +F+ L+ +G
Sbjct: 993 GFEDTSESSPGKPSQLRLQIEAFDDELADTASLG 1026
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -1
Query: 410 STGFDFNSRASPQSPSDIKRESRSFNTSLSSP 315
ST F+S AS SPS I S +T LSSP
Sbjct: 598 STSSTFSS-ASTSSPSSISSSISSSSTILSSP 628
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 437 YRPNKEMWNESEDSILTLINFDITTVM 517
Y K +W+ S+ L + NFD T+M
Sbjct: 923 YLAGKFVWDTSDVDYLLMYNFDNNTIM 949
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 143 FILTSSTTFLPISKKIPDPINPFSNNS 63
F LT STT P S P PIN +NS
Sbjct: 138 FSLTPSTTPPPSSASAPFPINSNISNS 164
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 135 QNKYVS*KRRTHSFLKVYHISHYSETTDFASK 230
QNK + +R+ S +K + +YS++TD K
Sbjct: 601 QNKSQNNERKASSQVKELEVKNYSKSTDLLKK 632
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 176 KRMRSSFLTNIFILTSSTTFLPISKKIPDPINPFSNNSTFIRMF 45
+R SS L N + +S + P+ P+P+N NNS + F
Sbjct: 805 ERNASSNLLNSSLFSSFNSVNPLISLEPNPLNRTLNNSVNLTDF 848
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 340 DRLSRLMSDGDCGEARELKSKPVEKPAKKTATLPS 444
D L+ +SD + + L K E AKK ++ PS
Sbjct: 340 DELAESLSDSEAARLQLLGIKKQESVAKKKSSFPS 374
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 24.6 bits (51), Expect = 9.7
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 383 ASPQSPSDIKRESRSFNTSLSSPRLIGRYLDPRNH-SY--YEKVLTVQDNN 240
A+ + P+D + S NT LSS L+P H SY YEK +Q N
Sbjct: 268 ANQEKPADSMASAASLNTPLSSN---DHSLNPHAHGSYPMYEKFQPIQHPN 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,961
Number of Sequences: 5004
Number of extensions: 41249
Number of successful extensions: 125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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