Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20166
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0708 - 6137865-6140909                                           30   1.1  
01_06_1137 - 34801750-34801955,34802586-34802856,34802961-348031...    29   3.2  
04_04_1042 - 30346132-30346285,30346629-30346759,30346867-303469...    28   5.6  
10_01_0219 + 2353668-2354940,2356303-2356419,2356520-2356560           27   9.9  
04_01_0356 + 4663723-4664253                                           27   9.9  
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458...    27   9.9  

>12_01_0708 - 6137865-6140909
          Length = 1014

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = -2

Query: 385  VLLHNLHLTSNAKVGPLTLLY--LHRA*SVDTLTQEII-RIMKKFSLYKTIIILNLDAKS 215
            VLLH L+++ N+  GP+   +  L++  S+D  + E+   I K+ +    + ILNL   +
Sbjct: 872  VLLHGLNMSHNSLTGPIPTQFGRLNQLESLDLSSNELFGEIPKELASLNFLSILNLSYNT 931

Query: 214  VV 209
            +V
Sbjct: 932  LV 933


>01_06_1137 -
           34801750-34801955,34802586-34802856,34802961-34803153,
           34803754-34803834,34803914-34804039,34804119-34804269,
           34804346-34804490,34805088-34805279
          Length = 454

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +3

Query: 87  GIRYFFTNRKKGC*TSQNKYVS*KRRTHSFLKVYHISHYSETTDFASKFN--IIIVLYSE 260
           GI     +RKKGC       +   +R  SF    H+ H ++  DF  +FN  ++I    E
Sbjct: 234 GIMLLIYSRKKGCIPLDILSIEDGKRLKSFK---HLLHRNKKVDFIEQFNEKLLIKQEGE 290

Query: 261 NFFI--IRMISWVKVSTDQ 311
           N  I  +R    ++VS  +
Sbjct: 291 NLQILDVRNFQSIEVSRSE 309


>04_04_1042 -
           30346132-30346285,30346629-30346759,30346867-30346938,
           30347284-30347370,30347479-30347505,30347777-30347869,
           30348470-30348558,30348649-30348727,30349102-30349231,
           30349344-30349464,30349619-30349726,30349837-30350152
          Length = 468

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = -2

Query: 475 ILTFIPHFFIG---TVMSQFSSLVFLQVSILIRV 383
           I  F+ HF IG   T++SQ+ SL+F+ + ++I V
Sbjct: 332 ITIFLRHFDIGIDVTLLSQYISLIFIGMLVVISV 365


>10_01_0219 + 2353668-2354940,2356303-2356419,2356520-2356560
          Length = 476

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 392 NSRASPQSPSDIKRESRSFNTSLSSPRLIGRYLDPRN 282
           +S+  P  P  IK ++  +N  +  PR+IG   DP +
Sbjct: 348 DSKIIPSHPPTIKSDNDEYNHVVIRPRVIGFIEDPNS 384


>04_01_0356 + 4663723-4664253
          Length = 176

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 186 YHISHYSETTDFASKFNIIIVLYSENFFIIR---MISWVKVSTDQA 314
           Y++ +Y   T FAS    IIVL + NF++     M+  V V+ D A
Sbjct: 68  YYVFYYCNATSFASSV-CIIVLLATNFYLSHTSVMVFNVLVALDMA 112


>03_06_0454 +
           34044351-34044499,34045495-34045510,34045640-34045862,
           34045969-34046092,34046168-34046294,34046821-34046882,
           34046972-34048023,34048167-34048556,34048667-34052628,
           34052710-34052796,34052885-34053004,34053096-34053152
          Length = 2122

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 295 RYRPIKRGEDREVLKDRLSRLMSDGDCGEARELKSKPVEK 414
           R RP   G D+E   D L+ + S+G+     ++K  P  K
Sbjct: 415 RCRPDDTGSDQENFVDALNNMESEGEAHAEMKIKKDPGAK 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,131,414
Number of Sequences: 37544
Number of extensions: 215620
Number of successful extensions: 516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)