Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20166
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39310| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_51449| Best HMM Match : tRNA-synt_2c (HMM E-Value=1.4)              27   7.6  
SB_33024| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)              27   7.6  

>SB_39310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 345 TFAFDVRWRLWRSTRIKIETCRKTSEENCDITVPIKKC 458
           TF F   WR+++  RI +   RK S   CD  V + KC
Sbjct: 243 TFIFICYWRIYKQVRICVAKERKLSRLVCD-RVELTKC 279


>SB_51449| Best HMM Match : tRNA-synt_2c (HMM E-Value=1.4)
          Length = 742

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 505 NVKINQCQNGILTFIPHFFIGTVMSQFSSLVFLQVSIL 392
           N KI+  +   LTF+P F +    S++S++ FL +++L
Sbjct: 71  NNKISTAKYNFLTFLPKFLL-EQFSRYSNVFFLFIALL 107


>SB_33024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 378 RSTRIKIETCRKTSEENCDITVPIKKCGMKVRIPF 482
           RST I I+  +   ++ CD  V  K C  +  +PF
Sbjct: 45  RSTDIVIDVMKLCCQQQCDYEVTSKNCFSESPVPF 79


>SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)
          Length = 651

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
 Frame = -2

Query: 517 HHGRNVKINQCQNGILTFI-----PHFFI--GTVMSQFSSLVFLQVSILIRVLLHNLHLT 359
           +HG N+K++Q    I   I      H+ I   T+  +F S+ +  VS ++  L  N H+T
Sbjct: 179 YHGYNIKVSQLNGRIAVLIDTVVGAHWSIISLTLADKFMSIKY-YVSRIVLALFGNCHVT 237

Query: 358 SNAKV 344
           + A+V
Sbjct: 238 AVARV 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,723,654
Number of Sequences: 59808
Number of extensions: 269250
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)