Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20166
         (548 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT016153-1|AAV37038.1| 1767|Drosophila melanogaster AT16405p pro...    29   5.5  
AF538714-1|AAN15143.1| 1255|Drosophila melanogaster histone deac...    29   5.5  
AF538713-1|AAN15142.1| 1203|Drosophila melanogaster histone deac...    29   5.5  
AE014298-1873|AAN09318.1| 1181|Drosophila melanogaster CG1770-PB...    29   5.5  
AE014298-1872|AAF48245.2| 1248|Drosophila melanogaster CG1770-PA...    29   5.5  
AE014298-1871|AAX52490.1| 1199|Drosophila melanogaster CG1770-PC...    29   5.5  
AE014134-1060|AAF52350.2| 1767|Drosophila melanogaster CG13991-P...    29   5.5  

>BT016153-1|AAV37038.1| 1767|Drosophila melanogaster AT16405p protein.
          Length = 1767

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = -1

Query: 353  RESRSFNTSLSSPRLIGRYLDPRNHSYYEKVLTVQDNNNI---KLRREVCCFRIMTYVVY 183
            R S      +  P +    L P NH YY  V+T  D N I   K R  +  F+  T +  
Sbjct: 1177 RNSLRLRLEVEVPDVRKTLLGPGNHKYYGAVITDLDENYIEEMKSRATIKSFKFKTSIQL 1236

Query: 182  F*KRMRSSF 156
                MR  +
Sbjct: 1237 LKDAMRLKY 1245


>AF538714-1|AAN15143.1| 1255|Drosophila melanogaster histone
           deacetylase dHDAC4 isoformb protein.
          Length = 1255

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 380 SPQSPSDIKRESRSFNTSLSSPRLIGRYLDPRNHS 276
           +PQ PS + R + + +TS S   L+G    P+ H+
Sbjct: 435 APQQPSPVVRSASATSTSSSQASLVGDVAPPQAHA 469


>AF538713-1|AAN15142.1| 1203|Drosophila melanogaster histone
           deacetylase dHDAC4 isoforma protein.
          Length = 1203

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 380 SPQSPSDIKRESRSFNTSLSSPRLIGRYLDPRNHS 276
           +PQ PS + R + + +TS S   L+G    P+ H+
Sbjct: 383 APQQPSPVVRSASATSTSSSQASLVGDVAPPQAHA 417


>AE014298-1873|AAN09318.1| 1181|Drosophila melanogaster CG1770-PB,
           isoform B protein.
          Length = 1181

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 380 SPQSPSDIKRESRSFNTSLSSPRLIGRYLDPRNHS 276
           +PQ PS + R + + +TS S   L+G    P+ H+
Sbjct: 361 APQQPSPVVRSASATSTSSSQASLVGDVAPPQAHA 395


>AE014298-1872|AAF48245.2| 1248|Drosophila melanogaster CG1770-PA,
           isoform A protein.
          Length = 1248

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 380 SPQSPSDIKRESRSFNTSLSSPRLIGRYLDPRNHS 276
           +PQ PS + R + + +TS S   L+G    P+ H+
Sbjct: 432 APQQPSPVVRSASATSTSSSQASLVGDVAPPQAHA 466


>AE014298-1871|AAX52490.1| 1199|Drosophila melanogaster CG1770-PC,
           isoform C protein.
          Length = 1199

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 380 SPQSPSDIKRESRSFNTSLSSPRLIGRYLDPRNHS 276
           +PQ PS + R + + +TS S   L+G    P+ H+
Sbjct: 383 APQQPSPVVRSASATSTSSSQASLVGDVAPPQAHA 417


>AE014134-1060|AAF52350.2| 1767|Drosophila melanogaster CG13991-PA
            protein.
          Length = 1767

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = -1

Query: 353  RESRSFNTSLSSPRLIGRYLDPRNHSYYEKVLTVQDNNNI---KLRREVCCFRIMTYVVY 183
            R S      +  P +    L P NH YY  V+T  D N I   K R  +  F+  T +  
Sbjct: 1177 RNSLRLRLEVEVPDVRKTLLGPGNHKYYGAVITDLDENYIEEMKSRATIKSFKFKTSIQL 1236

Query: 182  F*KRMRSSF 156
                MR  +
Sbjct: 1237 LKDAMRLKY 1245


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,149,982
Number of Sequences: 53049
Number of extensions: 390175
Number of successful extensions: 1051
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)