Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20166
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical pr...    32   0.31 
AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical ...    32   0.31 
U39667-2|AAQ91910.1|  426|Caenorhabditis elegans Xo lethal prote...    28   5.1  
L35129-1|AAA67047.1|  426|Caenorhabditis elegans xol-1 protein.        28   5.1  
AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 289 GSRYRPIKRGEDREVLKDRLSRLMSDGDCGEARELKSKPVEKPAKKTATLP 441
           G+   P+  G  R + + +L +L+S G    AR   +KP  KP  K+A  P
Sbjct: 20  GANVGPVT-GTTRSLYEKKLKKLLSGGAKTPARPTVAKPAPKPTPKSAPAP 69


>AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 289 GSRYRPIKRGEDREVLKDRLSRLMSDGDCGEARELKSKPVEKPAKKTATLP 441
           G+   P+  G  R + + +L +L+S G    AR   +KP  KP  K+A  P
Sbjct: 20  GANVGPVT-GTTRSLYEKKLKKLLSGGAKTPARPTVAKPAPKPTPKSAPAP 69


>U39667-2|AAQ91910.1|  426|Caenorhabditis elegans Xo lethal protein
           1, isoform c protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 457 HFFIGTVMSQFSSLVFLQVSILIRVLLH 374
           HF     +  FSSLVFL VSI+I  + H
Sbjct: 333 HFSNRISIPLFSSLVFLTVSIVINAMCH 360


>L35129-1|AAA67047.1|  426|Caenorhabditis elegans xol-1 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 457 HFFIGTVMSQFSSLVFLQVSILIRVLLH 374
           HF     +  FSSLVFL VSI+I  + H
Sbjct: 333 HFSNRISIPLFSSLVFLTVSIVINAMCH 360


>AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical
           protein T28F2.4a protein.
          Length = 748

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 544 GK*IEGRSLHHGRNVKINQCQNGILT 467
           G+ +E   L +GRN+ I Q +NG+ T
Sbjct: 350 GELLEKNHLEYGRNINIAQYKNGVRT 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,404,904
Number of Sequences: 27780
Number of extensions: 221869
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)