Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20166
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   6.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.2  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 88  PSIHFQITLHL*ECFFYINLI 26
           P I F ITL     F+ +NLI
Sbjct: 223 PDIFFNITLRRKTLFYTVNLI 243


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 408 RKTSEENCDITVPI 449
           +KT+EEN D  +PI
Sbjct: 412 KKTAEENTDYFMPI 425


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 88  PSIHFQITLHL*ECFFYINLI 26
           P I F ITL     F+ +NLI
Sbjct: 224 PDIVFNITLRRKTLFYTVNLI 244


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 295 LTQEIIRIMKKFSLYKTIIILNLDAKSV 212
           + QE++++MKK  +   II+   DA  +
Sbjct: 122 MIQEVLKLMKKKGINNGIIVNINDASGL 149


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 487 CQNGILTFIPHFFIGTVMSQFSSLVFLQVSILIRVLLHNL 368
           CQ G+  FI   ++G + S  + +++   +   R   H L
Sbjct: 652 CQPGVTAFIVTSWLGYMNSFVNPVIYTVFNPEFRKAFHKL 691


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 140 ILTSSTTFLPISKKIPDPINPFSNN 66
           + T  T F  ++ K P  I+ ++NN
Sbjct: 353 LATEPTLFSNVTPKFPRNIDEYNNN 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,523
Number of Sequences: 438
Number of extensions: 2599
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)