Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20164
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 65 7e-12
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 47 1e-06
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 43 2e-05
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 33 0.025
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 31 0.075
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 31 0.13
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 29 0.53
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 29 0.53
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 27 1.6
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 27 1.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 2.8
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 3.7
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 25 6.5
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 8.6
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 8.6
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 64.9 bits (151), Expect = 7e-12
Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
G+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G++S WRG
Sbjct: 35 GVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRG 93
Score = 34.3 bits (75), Expect = 0.011
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 431 NFANVIRYFPTQALNF 478
N ANV+RYFPTQALNF
Sbjct: 94 NTANVLRYFPTQALNF 109
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
G + A S V ++ + L S + ++++ G+VD + + + GL +RG
Sbjct: 140 GAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRG 197
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 47.2 bits (107), Expect = 1e-06
Identities = 22/58 (37%), Positives = 38/58 (65%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
G++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RG
Sbjct: 28 GVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRG 78
Score = 28.7 bits (61), Expect = 0.53
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGKL 435
G + + +T P + ++ QV + YK I A I K +G+ F+RG
Sbjct: 234 GFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYS 290
Query: 436 RQRHQVLP 459
+++P
Sbjct: 291 SNMLKIIP 298
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 43.2 bits (97), Expect = 2e-05
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +1
Query: 232 VR*GLPGCGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 411
V+ G+ G G + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 18 VKSGIAG-GTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75
Query: 412 LSFWRGKLRQRHQVLPDPG 468
++G ++V P G
Sbjct: 76 HGLYQGHTATLYRVFPYAG 94
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 33.1 bits (72), Expect = 0.025
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGKL 435
G+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++G +
Sbjct: 212 GLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFKG-I 269
Query: 436 RQRHQVLPDPGAQLS 480
R R V+ P +S
Sbjct: 270 RPR-MVVAMPATAVS 283
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 31.5 bits (68), Expect = 0.075
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
+S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 344 LSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKG 397
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 30.7 bits (66), Expect = 0.13
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 256 GISAAVSKT-AVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
G A ++T V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G
Sbjct: 111 GSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNG 163
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 28.7 bits (61), Expect = 0.53
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 244 LPGCGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 423
L G GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ +
Sbjct: 276 LGGAGIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLY 332
Query: 424 RGKLRQRHQVLPD 462
G +V+P+
Sbjct: 333 GGLTAHLLRVVPN 345
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 28.7 bits (61), Expect = 0.53
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
++ ++ PI+ VK +Q ++A + YK + +I + GLL FW G
Sbjct: 212 VAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSG 262
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 346 AADQRYKGIVDAFVRIPKEQGLLSFWRG 429
A Y DAF +I K +GL +F+RG
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRG 252
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
IS + V P+E V++ LQ+Q K + Y G D +I + GL +G
Sbjct: 121 ISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGLSGIMKG 172
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 82 YEITPNLLFKNQELVFRDPPSACAATPTSTY 174
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 386 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 279
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 25.0 bits (52), Expect = 6.5
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +1
Query: 163 TSTYSPSEDHIIEQNVEPRR-----SGRVR*GLPGCGISAAVSKTAVA-PIERVKLLLQV 324
+STY H+ ++P + + L CG S + SKTA + +E +K LQ
Sbjct: 105 SSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIK-KLQE 163
Query: 325 QHVSKQIAADQRYKGIVD 378
++ + A R + +VD
Sbjct: 164 KNEIPIVRARMRIRIVVD 181
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 94 PNLLFKNQELVFRDPPSACAATPT 165
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 62 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 184
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,175
Number of Sequences: 5004
Number of extensions: 39076
Number of successful extensions: 114
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -