Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20164
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 1e-10
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 56 2e-08
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 42 2e-04
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 39 0.003
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 39 0.003
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.008
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.015
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 36 0.019
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.044
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 34 0.077
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 33 0.10
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 33 0.10
SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061) 33 0.10
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 33 0.14
SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 30 0.95
SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 30 0.95
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012) 30 1.3
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.3
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018) 29 2.2
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 28 3.8
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 5.1
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 27 6.7
SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 27 6.7
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGK 432
G +A +SKTA APIERVKLL+Q Q + K D YKG++D R + +G LSFWRG
Sbjct: 17 GAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFWRGN 76
Query: 433 L 435
L
Sbjct: 77 L 77
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +2
Query: 431 NFANVIRYFPTQALNFRLQGQVQA 502
N AN IRYFPTQALNF + QV+A
Sbjct: 76 NLANCIRYFPTQALNFAFKDQVKA 99
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/75 (34%), Positives = 48/75 (64%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGKL 435
GI+ AVS+T+V+P+ERVK+LLQ+Q + ++KG++ ++I KE+G+L +++G
Sbjct: 42 GIAGAVSRTSVSPLERVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGYFKGNG 95
Query: 436 RQRHQVLPDPGAQLS 480
++ P Q +
Sbjct: 96 TNVIRIFPYSAVQFA 110
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 55.6 bits (128), Expect = 2e-08
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 426
G +A +SKTA APIERVKLL+Q Q + K YKG+VD +R + +G+ SFWR
Sbjct: 18 GAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +1
Query: 250 GCGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
G G A VS+TA AP++R+K+LLQVQ A+ GIV F + +E G+ S WRG
Sbjct: 142 GGGALAGVSRTATAPLDRLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRG 195
Query: 430 KLRQRHQVLPDPG 468
++ P+ G
Sbjct: 196 NGANVIKIAPESG 208
Score = 31.5 bits (68), Expect = 0.41
Identities = 19/78 (24%), Positives = 40/78 (51%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGKLR 438
++ S+T++ P+E +K L ++ + Y+G++ A I +++G+ SF+RG
Sbjct: 239 MAGVASQTSIYPLEVLKTRLAIRKTGQ-------YRGLLHAASVIYQKEGIRSFYRGLFP 291
Query: 439 QRHQVLPDPGAQLSPSRT 492
++P G L+ T
Sbjct: 292 SLLGIIPYAGIDLAVYET 309
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/74 (32%), Positives = 39/74 (52%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGKLR 438
I A TAV PI+ VK +Q Q + A++ YK +D F ++ + +G + +RG L
Sbjct: 922 IKKATGATAVYPIDLVKTRMQNQRAV--LEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLP 979
Query: 439 QRHQVLPDPGAQLS 480
Q V P+ +L+
Sbjct: 980 QLLGVSPEKAIKLT 993
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 262 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 162 STLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 214
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 253 CG-ISAAVSKTAVAPIERVKLLLQVQ---HVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 420
CG +S +SK + P + +K +QVQ + Q+Y G+ D F I KE+G +
Sbjct: 35 CGALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGL 94
Query: 421 WRG 429
++G
Sbjct: 95 FKG 97
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 262 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
S ++ V P E +K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 431 STLIAMVTVYPCEVIKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 37.1 bits (82), Expect = 0.008
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAA---------DQRYKGIVDAFVRIPKEQG 408
GI+A++++ A PI+ K+ LQ+Q S +A+ D Y+G++ V + K +G
Sbjct: 22 GIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTMVTLFKTEG 81
Query: 409 LLSFWRGKLRQRHQVL 456
+ + ++G + H+ L
Sbjct: 82 MKTMYKGLIPGIHRQL 97
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 36.3 bits (80), Expect = 0.015
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 256 GISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
G+S+ V +A+A P + VK+ Q + + I YK + AF +I K++G L W G
Sbjct: 121 GVSSGVIGSAIATPTDLVKIRFQAVKIGETIP----YKNMFHAFYKIAKKEGFLGLWTG 175
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 151 AATPTSTYSPSEDHI--IEQNVEPRRSGRVR*GLPGCGISAAVSKTAVAPIERVKLLLQV 324
AA + T P+ DH + N E R G V L ++ V+ +P++ V+
Sbjct: 183 AACISGTQIPTYDHTKHLLLNAELMREG-VALHLASALVAGFVATCVASPVDIVRTRFMT 241
Query: 325 QHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
Q + Y+G +D + + +G+L+ ++G
Sbjct: 242 QPKDTK-GRPLVYQGTLDCIYKTVRHEGILALYKG 275
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 35.9 bits (79), Expect = 0.019
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 289 APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
AP ERVK LLQVQ K+ RY+G+ D +++ + GL ++G
Sbjct: 179 APTERVKCLLQVQ---KESGTKARYQGLGDCLLQVYRTGGLRGVFKG 222
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 34.7 bits (76), Expect = 0.044
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 GISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGK 432
G +A V TA P++ V+ L VQ +S + ++ Y GIV A RI E+G+ ++G
Sbjct: 35 GATAGVVATASTHPLDVVRARLTVQDMSTRSISN--YTGIVSALRRIHIEEGIRGLYKGL 92
Query: 433 LRQRHQVLPDPGAQLS 480
+ + P G Q S
Sbjct: 93 VPSLVSIAPFLGVQQS 108
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 33.9 bits (74), Expect = 0.077
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 343 IAADQRYKGIVDAFVRIPKEQGLLSFWRGKLRQRHQVLPDPG 468
I ++Y G+++AF RI +++G+ +F+RG + ++P G
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAG 60
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
IS + A P++ K +Q + I YKG +D RI + +G+ + W+G
Sbjct: 102 ISGLATTVASMPVDIAKTRIQNMRI---IDGKPEYKGTMDVLARIVRNEGVFALWKG 155
Score = 30.7 bits (66), Expect = 0.72
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 361 YKGIVDAFVRIPKEQGLLSFWRGKLRQRHQVLPDPGAQLS 480
Y + +A R+ KE+G+L+ WRG + + + AQL+
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVRAMVVNAAQLA 74
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = +1
Query: 250 GCGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
GC ++ + AV P++ +K LQ+ + + + Y GI+D +I +GL +F++G
Sbjct: 212 GC-LAGMTASVAVNPLDVIKTRLQLLNRPQ---GEPNYNGIIDCAKKIYSNEGLAAFYKG 267
Query: 430 KLRQRHQVLP 459
+ + + P
Sbjct: 268 AVPRMIVIAP 277
>SB_9806| Best HMM Match : Mito_carr (HMM E-Value=0.061)
Length = 114
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 247 PGCGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 426
P G+S +KT AP+ER+K+L Q Q+ + + A I K++GL +++
Sbjct: 60 PPLGLSTCCAKTTTAPLERLKILFQAQN------KHYKNMSVFGALKAIYKKEGLQGYYK 113
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 274 SKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGKLRQR 444
S+ VA ER +L+ Q Q +D RY+G +D+F + +G L +RG R R
Sbjct: 278 SRQTVACPERCGVLMASQGKRGQYMSDARYRGHLDSFRGDARYRGHLDSFRGDARYR 334
>SB_39097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 312 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 413
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 83 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 117
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 312 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 413
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 217
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 0.95
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 373 VDAFVRIPKEQGLLSFWRG 429
+DA ++IP+ +GL S WRG
Sbjct: 64 IDALIKIPRYEGLSSLWRG 82
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
I+ + + P++RVK +LQ++ + Y G VD RI +E G+ ++G
Sbjct: 146 IAGVATSFVLTPLDRVKCILQIE----KAFGGSSYGGPVDCLRRIYREAGVRGVYKG 198
>SB_12356| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 404
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 312 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 413
A+ S RQQ R RP +GY +R R YP+ SP
Sbjct: 261 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARASP 295
>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
Length = 550
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 312 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 413
A+ S RQQ R RP GY +R R YP+ SP
Sbjct: 84 ASGSNQRQQQARGRPQASGYNQRSRRGYPRARASP 118
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
G + VS + P + +K +Q + RYKG++D ++ KE+G++ F RG
Sbjct: 140 GFAGVVSWASTFPFDVIKSRIQADGNLGKF----RYKGMMDCALQSYKEEGMIVFTRG 193
>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
Length = 406
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 312 AAPSTARQQADRRRPALQGY-RRCLRPYPQGAGSP 413
A+ S RQQ R RP +GY +R R YP+ +P
Sbjct: 183 ASGSNQRQQQARGRPQARGYNQRSRRGYPRARATP 217
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
GI+ + P E VK LQ+ + AA Y+G +D + K G+L +RG
Sbjct: 48 GIAGGLEICCTFPTEYVKTQLQLD----EKAAKPIYRGPIDCVKKTVKGHGVLGLYRG 101
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGKL 435
+S + A P++ +K+ LQ + K +KG +D F++ + +GL ++G L
Sbjct: 29 VSGMLGCAAGQPLDLLKVRLQAMNQVKP-GETAPFKGAMDCFMKTVRLEGLRGLYKGML 86
>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 792
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 40 ISKKAHTYPLCSRDYEITPNLLFKNQELV----FRDPPSACAATPTSTYSPS 183
++ ++ Y C + E +P + + ++D SAC A P TY PS
Sbjct: 106 LTDESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 88 ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 198
+TPN LL + + R+P SA S YSPSE I+
Sbjct: 963 LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003
>SB_13696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 27.5 bits (58), Expect = 6.7
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +1
Query: 118 ELVFRDPPSA----CAATPTSTYSPSEDHIIEQNVEPRRSGRVR*GLPGCGISAAVSKTA 285
E + RDP + A+P S I EQNVE S + G+ G + T
Sbjct: 269 EALTRDPKESDTNVSRASPDSHLQTVISEIREQNVELVESSPIEAGVDGETPAPDEKSTD 328
Query: 286 VAPIERVKLLLQVQHVSK-QIA 348
VAPI V LQ + ++ QIA
Sbjct: 329 VAPISEVADALQEKEENEPQIA 350
>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 1170
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 67 LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 189
LC +D E++P LLF N +++ R P A P++ S ED
Sbjct: 54 LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,994,935
Number of Sequences: 59808
Number of extensions: 331274
Number of successful extensions: 985
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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