Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20162
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.58
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.3
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 2.3
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 25 7.2
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 7.2
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 7.2
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 7.2
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.5
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 25 9.5
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 9.5
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.58
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 354 VHKLNRVFGEDKSELNWETIPDDVL 280
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 110 QLYNSVVVADYDSAVEKSKHLYEEKKS 190
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 269 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 370
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 299 VSQLSSDLSSPKTRLSLCTSATV 367
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 7.2
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = -3
Query: 474 RAINFQLDSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETI 295
+++NF +++ +V+ S+ V + + +S + + + ELN+ +
Sbjct: 207 QSLNFSVENFFPSDESVSFSSSSSVIKRMFKEHESVLRNSMDDFHTAISSSEIELNYSNV 266
Query: 294 PDDVLGALEPKL--IAYSMQFILLFRISLFXTF 202
L LEPK I +M L +L+ T+
Sbjct: 267 SVSTLKLLEPKFERITLAMSAQLAASFTLYETY 299
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 369 ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL 259
E V +H L+ F ED+ E E I DV A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 355 KRDGLALTLSNDVQGDDGRPAYGD 426
K++G+ + ND G++G AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 379 LSNDVQGDDGRPAYGDGKDKTSPRVKLEVNRSXGE 483
+++D QGDD P KDK + + EV S G+
Sbjct: 54 IASDQQGDDQCPQSDTAKDKKTEFKQDEVPNSNGK 88
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 101 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVXNKLIRNN 232
LEE + V+ + A+ SK + ++ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 287 SSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQARESSW-K 463
SSGI+ + L K L L TS S + T+ +PT++ + A +SW
Sbjct: 147 SSGILLNFTVVLKQLKHALGLHTSVDNSQEFILQFLRTTLLSVPTSSIVSISADPTSWNN 206
Query: 464 LIALXENNKVYFK 502
L L + N ++ K
Sbjct: 207 LNVLMKYNFMFQK 219
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 286 CPWSPGAKVDSVLHAVHLVVSYQFV 212
CPWS G +D +L + + +S +FV
Sbjct: 52 CPWSIGNLLDGILSVLTIYIS-EFV 75
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 145 VVIGDDDAIVKLLLQNVVRDVGICSIQ 65
VVIGD+ I K +L N V+ CSI+
Sbjct: 371 VVIGDNCRIGKAILANSVKIGNNCSIE 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,736
Number of Sequences: 5004
Number of extensions: 31684
Number of successful extensions: 133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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