Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20162
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 31 0.77
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437... 29 2.3
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 29 2.3
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 29 3.1
12_01_0378 - 2946916-2947590 28 4.1
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773... 28 4.1
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 28 5.4
10_08_0589 + 19022233-19022457,19022578-19022709,19023129-190232... 27 7.2
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011... 27 7.2
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235... 27 9.5
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 313 TQLGNNPGRCPWSPGAKVDSVLHAVHLVVSYQFVXD 206
T G P CP S AKV++ HLV++Y++ D
Sbjct: 411 TPFGGGPRLCPGSELAKVEAAFFLHHLVLNYRWRID 446
>06_01_0605 +
4373697-4373872,4374840-4374876,4375296-4375399,
4375942-4376137,4376385-4376451,4376895-4376998,
4377090-4377174,4377309-4377369,4377694-4377825,
4377924-4377993,4379261-4379413,4379583-4379694,
4379779-4379920,4380023-4380140,4380862-4380957,
4381061-4381189
Length = 593
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 188 SEVITNVXNKLIRNN--KMNCMEYAINFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTS 358
SE I+++ N+L R+ K+ C N S A I S+L S LS+ TRL CTS
Sbjct: 343 SEFISHLANQLARHQFLKIACQLERKNIAS-AYSLLRVIESELQSYLSAVNTRLGHCTS 400
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 250 VRYQLWLQGSKDIVRDCFPVEFRLIFAEN---AIKLMYKR 360
VRY +W+ G +VRD + + R ++ +N AI Y+R
Sbjct: 399 VRYSIWIDGKLKLVRDPYQLLERFLWRKNVSFAISRHYRR 438
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 289 RCPWSPGAKVDSVLHAVHLVVSYQFV 212
RC WSP + V + H+V +Y FV
Sbjct: 430 RCLWSPDGSILGVAFSKHIVQTYAFV 455
>12_01_0378 - 2946916-2947590
Length = 224
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 5 GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 145
G+ ++P +++L ASL AA++ VP + ++ +VV D+D
Sbjct: 87 GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133
>06_03_0095 -
16575938-16576585,16577028-16577219,16577294-16577392,
16577496-16577618,16577717-16577929,16578143-16578251,
16578339-16578427,16578604-16578880,16578974-16579084,
16579160-16580508,16581218-16581631
Length = 1207
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -3
Query: 399 ALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLIAYSMQFILLFRI 220
+L +IA S + K + + GE K W PDD +PK A + F LL +
Sbjct: 316 SLLVIALLGSVLFGIWTKEDLMNGEMK---RWYLRPDDSTIFYDPKRAALASFFHLLTAL 372
Query: 219 SLFXTFVMTSLFFS 178
L+ F+ SL+ S
Sbjct: 373 MLYSYFIPISLYIS 386
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 352 YKRDGLALTLSNDVQGDDGRPAYGDGKDKTSPRVKLEVNRSXGEQQGLLQDLDT 513
Y+ D D Q ++ R Y G+D+ S R + EV G+Q+ +D D+
Sbjct: 241 YRHDRSPERSRGDRQRNNDR--YAQGRDEKSERYRSEVKHDEGDQKRSRRDTDS 292
>10_08_0589 +
19022233-19022457,19022578-19022709,19023129-19023227,
19023384-19023431,19023926-19023976,19024205-19024273,
19024337-19024419,19024643-19024766,19024843-19024902,
19024983-19025225,19025426-19025509,19025581-19025728,
19025909-19025986,19025987-19026114,19026204-19026251,
19026922-19027052,19027708-19027817,19028365-19028468,
19028614-19028684,19029091-19029389,19029507-19029682
Length = 836
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 32 AIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVX 211
AIV L LFV SL D+D+ N L + + +S + Y V+ + + +++ N
Sbjct: 140 AIVSLMLFVESLQILDADI-NKSLVKSIQDSPELRRYREQVQVLESRLYQLMDKLVRNAD 198
Query: 212 NK 217
N+
Sbjct: 199 NE 200
>03_06_0460 -
34098115-34098622,34098981-34099355,34100939-34101156,
34101235-34101297
Length = 387
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 93 LGTSESAAYRDATKRHRITIAGFIFGAS 10
+G +++A+Y +T R + +AG + GAS
Sbjct: 284 VGAADAASYCGSTSRRMVQVAGEVLGAS 311
>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
2353031-2353708,2353800-2353964,2354139-2354433,
2354581-2354795,2354885-2355190,2355269-2355332,
2355426-2355665,2355783-2355886
Length = 1505
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 54 SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 149
+W + +L +P ++ W + IASS +T +
Sbjct: 1080 TWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,085,648
Number of Sequences: 37544
Number of extensions: 211125
Number of successful extensions: 697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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