Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20162
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)                 29   1.8  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_42634| Best HMM Match : Trypan_PARP (HMM E-Value=0.12)              28   4.2  
SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)                 27   7.3  
SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)                 27   9.7  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18)                  27   9.7  

>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
          Length = 453

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 182 KKSEVITNVXNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQLSSD 319
           K+  ++TN+ +  I  N++N  +  INF  R     S + +++SSD
Sbjct: 214 KEKMILTNLKSPRITANQLNVYKNQINFLKRMFELQSALEAEVSSD 259


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 75  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMSXT 215
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++  T
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRVRQT 448



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 75  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMSXT 215
           +IPTS     R SFT+    P + VR  R S +T  RR  +S++  T
Sbjct: 146 RIPTSRVRQTRLSFTMVRRIPTSRVRQTRLS-FTMVRRIPTSRVRQT 191


>SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +2

Query: 161 SKHLYEEKKSEVITNVXNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQLSSDLSSPKTR 340
           S+ L +EKK E ++ +    + N K + + +  NF +  P   S    +L ++ +S  + 
Sbjct: 224 SQRLEKEKKKEWVSCIKKTEVTNRKRSLVSFLRNFATGNPFFPSFFHYELPAEEASGTST 283

Query: 341 LSLCTSATVSL 373
             L T   VSL
Sbjct: 284 GRLITRCQVSL 294


>SB_42634| Best HMM Match : Trypan_PARP (HMM E-Value=0.12)
          Length = 436

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +2

Query: 161 SKHLYEEKKSEVITNVXNKLIRNNKMNCMEYAINFGS--RAPRTSSGIVSQLSSDLSSPK 334
           +K +YE     ++     KL    + NC  ++I F +  R  RTSS  + +  ++++  K
Sbjct: 37  AKWVYESPLKTLVKASRGKLFSQIRSNCNPFSIPFKALGREQRTSSAELKKEGNEITEKK 96

Query: 335 TRL 343
            R+
Sbjct: 97  LRI 99


>SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
          Length = 649

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 99  FWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMSXT 215
           FW  +FT+A  + I    LKRA +    + AK  Q + T
Sbjct: 564 FWFYAFTLAFQAFIFDQSLKRAEVVASMKIAKKQQKTRT 602


>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
          Length = 306

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 284 TSSGIVSQLSSDLSSPKTRLSLCTSATVSL 373
           T SG++ QL  DL   KTR     SA + L
Sbjct: 103 TQSGVIQQLDGDLRMMKTRCGELESAMLEL 132


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 110 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVXNKLIRNNKMNCMEYAINFGSRAPRTS 289
           ++YNS+    Y+S   K  +    K +  + N     + N + NC+ + IN    +   S
Sbjct: 325 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 384

Query: 290 S 292
           S
Sbjct: 385 S 385



 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 110 QLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVXNKLIRNNKMNCMEYAINFGSRAPRTS 289
           ++YNS+    Y+S   K  +    K +  + N     + N + NC+ + IN    +   S
Sbjct: 418 EIYNSLDNKIYNSLDNKIYNSLNNKINNSLDNKIYNSLDNKRYNCLNFHINTDHHSYHAS 477

Query: 290 S 292
           S
Sbjct: 478 S 478


>SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18)
          Length = 844

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 388 DVQGDDGRPAYGDGKDKTSP-RVKLEVNRSXGEQQGLLQ 501
           D + DDG    GDG DKT   ++K  V  S  + + L Q
Sbjct: 473 DKEDDDGDEDDGDGNDKTEDLQMKSSVQGSTNKSEALRQ 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,553
Number of Sequences: 59808
Number of extensions: 244535
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)