Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20162
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   6.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   6.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   8.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   8.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.0  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 178 GEEERSHHKCREQTDTKQQDELHGV 252
           GE   S  + RE    ++ D+LH V
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNV 273


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 86  VPNDILEEQLYNSVVVADYDSAVEK 160
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 86  VPNDILEEQLYNSVVVADYDSAVEK 160
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 181 EEERSHHKCREQTDTKQQDELH 246
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 181 EEERSHHKCREQTDTKQQDELH 246
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 158 KSKHLYEEKKSEVITNVXNKLIRNNKMNCMEYAINFGSRAP 280
           K + +     +  I+N+ N    NN    + Y IN+  + P
Sbjct: 77  KERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIP 117


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 158 KSKHLYEEKKSEVITNVXNKLIRNNKMNCMEYAINFGSRAP 280
           K + +     +  I+N+ N    NN    + Y IN+  + P
Sbjct: 315 KERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIP 355


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 405 IVALNIIAQRQSETVALVHKLNRV 334
           +VA+ ++   QS  +  +H++NRV
Sbjct: 355 VVAMKMMHLPQSNKMNRMHRMNRV 378


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 481 EQQGLLQDLDTERNQYLV 534
           +QQ L+Q L   ++QYL+
Sbjct: 182 QQQRLIQQLQITQSQYLL 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,589
Number of Sequences: 438
Number of extensions: 2043
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)