Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20162
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.091
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   0.64 
At1g28240.1 68414.m03466 expressed protein                             29   2.6  
At5g64820.1 68418.m08155 hypothetical protein                          27   6.0  
At5g47690.1 68418.m05887 expressed protein                             27   6.0  
At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) / ...    27   6.0  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   6.0  
At1g59077.1 68414.m06670 hypothetical protein                          27   6.0  
At1g58766.1 68414.m06659 hypothetical protein                          27   6.0  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   6.0  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   7.9  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 8   LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 187
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 188 SEVITNV 208
             +  N+
Sbjct: 214 GSIAPNL 220


>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 278 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 370
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At1g28240.1 68414.m03466 expressed protein
          Length = 581

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +1

Query: 253 RYQLWLQGSKDIVRDCFPVEFRLIFAEN---AIKLMYKR-DGLALTLSNDVQG 399
           RY LW+ G  ++V D + +  R ++ +N   AI   YKR D L    +N   G
Sbjct: 355 RYSLWIDGKLELVVDPYQILERFLWRKNATFAISRHYKRFDVLVEAEANKAAG 407


>At5g64820.1 68418.m08155 hypothetical protein 
          Length = 145

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/79 (25%), Positives = 39/79 (49%)
 Frame = -3

Query: 474 RAINFQLDSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETI 295
           R I F + S  C+++ +  G SA  A +  A ++ E  ++V  ++ +FG      +WE I
Sbjct: 5   RRIRFGV-SVFCIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI 63

Query: 294 PDDVLGALEPKLIAYSMQF 238
               +  ++ KL   ++ F
Sbjct: 64  -QGAMQKIQMKLYPPNLDF 81


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +2

Query: 95  DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVXNKLIR 226
           D+LE++ Y   V+       + +  +YE ++SEV+  + +K+++
Sbjct: 734 DMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILK 777


>At5g39510.1 68418.m04784 vesicle transport v-SNARE 11 (VTI11) /
           vesicle soluble NSF attachment protein receptor VTI1a
           (VTI1A) identical to SP|Q9SEL6 Vesicle transport v-SNARE
           11 (AtVTI11) (Vesicle transport v-SNARE protein VTI1a)
           (Vesicle soluble NSF attachment protein receptor VTI1a)
           (AtVTI1a) {Arabidopsis thaliana}
          Length = 221

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
 Frame = +2

Query: 146 SAVEKSKHLYEEKKSEVITNVXNKLIRNNKMNCMEYAINFGSRAPRTSSGIVSQL---SS 316
           SA+       ++K SE+ + + N  +   KM+     +   +  P   S ++ +L    S
Sbjct: 25  SAISLDGEQKKQKLSEIKSGLENAEVLIRKMD-----LEARTLPPNLKSSLLVKLREFKS 79

Query: 317 DLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTR 439
           DL++ KT +   TS  ++      + +A MAD  TA+A  R
Sbjct: 80  DLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 101  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 208
            LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 101 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 208
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 101 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 208
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +3

Query: 54   SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 149
            +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 118 VKLLLQNVVRDVGICSIQRCH 56
           +K  ++N+++  G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,721,168
Number of Sequences: 28952
Number of extensions: 170997
Number of successful extensions: 754
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)