Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20161
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0923 + 20843477-20845044,20846081-20846996                       29   0.93 
10_06_0012 - 9586478-9588880                                           29   1.2  

>04_03_0923 + 20843477-20845044,20846081-20846996
          Length = 827

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 130 LLTMRHFTKKIVWNKHVNL--NNTFTILLARFQSVANDSNTS 11
           L  + H TK I+W+ H N+   +T  ILL     V   S+ S
Sbjct: 106 LAILDHATKSIIWSTHANITAKDTIAILLNNGNLVLRSSSNS 147


>10_06_0012 - 9586478-9588880
          Length = 800

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 130 LLTMRHFTKKIVWNKHVN--LNNTFTILLARFQSVANDSNTS 11
           ++ +   TK I+W+ HVN   N+T  +LL     V   S+ S
Sbjct: 102 MVILDQVTKNIIWSTHVNTRTNHTIVVLLNNGNLVLQSSSNS 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,351,419
Number of Sequences: 37544
Number of extensions: 110348
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)