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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20161
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.96 
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_52763| Best HMM Match : DUF1498 (HMM E-Value=1.9)                   26   9.0  
SB_8002| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.0  

>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
 Frame = -2

Query: 199 KSINNTRKHLSVLQLF------VVTEPLLLLTMRHFTKKIVWNKHVNLNNTF-TILLARF 41
           KSI+ T K++  L+LF      ++T P++L+ + H T K+V    +  +N F   LLA F
Sbjct: 633 KSID-TLKNIEALELFAEMLTPIITCPVILIGLSHKTVKVVTVARIVSDNAFLASLLAYF 691

Query: 40  QSVANDSN 17
             +++  +
Sbjct: 692 TKLSSSGS 699


>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -2

Query: 139 PLLLLTMRHFTKKIVWNKHVNLNNTFTILLARFQSVANDSNTSPSK 2
           PLL+   R    +++W +H  +  T ++    F  ++ND+ + PS+
Sbjct: 369 PLLIFPCRDVINRLIWKEHAPILATDSVSRTMF-LISNDTLSGPSR 413


>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 187  NTRKHLSVLQLFVVTEPLLLLTMRHFTKKIVWNKHVNLNNTFTILLARF--QSVANDSNT 14
            N  KH    Q+  +  P+LLL  RH     V  +    N  +  L  R+  Q V +D+N 
Sbjct: 1404 NAHKHSRSWQVLALVGPVLLLQRRH-----VRTRKERKNRGYPQLCERYEKQQVYHDTNR 1458

Query: 13   SP 8
             P
Sbjct: 1459 GP 1460


>SB_52763| Best HMM Match : DUF1498 (HMM E-Value=1.9)
          Length = 355

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 83  REFEQYFYNFVSTLPK 36
           +EF+QYFYN V++L +
Sbjct: 227 KEFQQYFYNGVASLSR 242


>SB_8002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 83  REFEQYFYNFVSTLPK 36
           +EF+QYFYN V++L +
Sbjct: 221 KEFQQYFYNGVASLSR 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,134,606
Number of Sequences: 59808
Number of extensions: 152410
Number of successful extensions: 260
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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