BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbS20161 (338 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.96 SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3 SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0 SB_52763| Best HMM Match : DUF1498 (HMM E-Value=1.9) 26 9.0 SB_8002| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0 >SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 768 Score = 29.1 bits (62), Expect = 0.96 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Frame = -2 Query: 199 KSINNTRKHLSVLQLF------VVTEPLLLLTMRHFTKKIVWNKHVNLNNTF-TILLARF 41 KSI+ T K++ L+LF ++T P++L+ + H T K+V + +N F LLA F Sbjct: 633 KSID-TLKNIEALELFAEMLTPIITCPVILIGLSHKTVKVVTVARIVSDNAFLASLLAYF 691 Query: 40 QSVANDSN 17 +++ + Sbjct: 692 TKLSSSGS 699 >SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 744 Score = 28.7 bits (61), Expect = 1.3 Identities = 12/46 (26%), Positives = 25/46 (54%) Frame = -2 Query: 139 PLLLLTMRHFTKKIVWNKHVNLNNTFTILLARFQSVANDSNTSPSK 2 PLL+ R +++W +H + T ++ F ++ND+ + PS+ Sbjct: 369 PLLIFPCRDVINRLIWKEHAPILATDSVSRTMF-LISNDTLSGPSR 413 >SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1751 Score = 25.8 bits (54), Expect = 9.0 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = -2 Query: 187 NTRKHLSVLQLFVVTEPLLLLTMRHFTKKIVWNKHVNLNNTFTILLARF--QSVANDSNT 14 N KH Q+ + P+LLL RH V + N + L R+ Q V +D+N Sbjct: 1404 NAHKHSRSWQVLALVGPVLLLQRRH-----VRTRKERKNRGYPQLCERYEKQQVYHDTNR 1458 Query: 13 SP 8 P Sbjct: 1459 GP 1460 >SB_52763| Best HMM Match : DUF1498 (HMM E-Value=1.9) Length = 355 Score = 25.8 bits (54), Expect = 9.0 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = -1 Query: 83 REFEQYFYNFVSTLPK 36 +EF+QYFYN V++L + Sbjct: 227 KEFQQYFYNGVASLSR 242 >SB_8002| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 297 Score = 25.8 bits (54), Expect = 9.0 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = -1 Query: 83 REFEQYFYNFVSTLPK 36 +EF+QYFYN V++L + Sbjct: 221 KEFQQYFYNGVASLSR 236 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,134,606 Number of Sequences: 59808 Number of extensions: 152410 Number of successful extensions: 260 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 244 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 260 length of database: 16,821,457 effective HSP length: 73 effective length of database: 12,455,473 effective search space used: 485763447 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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