Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20161
         (338 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051660-1|AAK93084.1| 1374|Drosophila melanogaster LD17001p pro...    30   0.88 
AE014297-4346|AAN14163.1| 1374|Drosophila melanogaster CG11897-P...    30   0.88 
AE014297-4345|AAF56869.2| 1374|Drosophila melanogaster CG11897-P...    30   0.88 

>AY051660-1|AAK93084.1| 1374|Drosophila melanogaster LD17001p
           protein.
          Length = 1374

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = -2

Query: 199 KSINNTRKHLSVLQLFVVTEPLLLLTMRHFTKKIVWNKHVNLNNTFTILLARFQSVANDS 20
           K++++T     V+ LFV    +L       ++ ++W + + +N T T+L     ++AND+
Sbjct: 734 KALDSTFLLGIVISLFVCARIMLTGVDYFLSRWVIWEEQIAVNRTTTLLNETDTTIANDT 793


>AE014297-4346|AAN14163.1| 1374|Drosophila melanogaster CG11897-PB,
           isoform B protein.
          Length = 1374

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = -2

Query: 199 KSINNTRKHLSVLQLFVVTEPLLLLTMRHFTKKIVWNKHVNLNNTFTILLARFQSVANDS 20
           K++++T     V+ LFV    +L       ++ ++W + + +N T T+L     ++AND+
Sbjct: 734 KALDSTFLLGIVISLFVCARIMLTGVDYFLSRWVIWEEQIAVNRTTTLLNETDTTIANDT 793


>AE014297-4345|AAF56869.2| 1374|Drosophila melanogaster CG11897-PA,
           isoform A protein.
          Length = 1374

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = -2

Query: 199 KSINNTRKHLSVLQLFVVTEPLLLLTMRHFTKKIVWNKHVNLNNTFTILLARFQSVANDS 20
           K++++T     V+ LFV    +L       ++ ++W + + +N T T+L     ++AND+
Sbjct: 734 KALDSTFLLGIVISLFVCARIMLTGVDYFLSRWVIWEEQIAVNRTTTLLNETDTTIANDT 793


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,101
Number of Sequences: 53049
Number of extensions: 213260
Number of successful extensions: 386
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 777358641
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)