Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20161
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical
           protein Y69H2.1 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 196 SINNTRKHLSVLQLFVVTEPLLLLTMRHFTKKIVWNKHVNLNNTFTILL 50
           S NNT    ++L  F +   ++ +  +   KK    KH++LN +F ILL
Sbjct: 207 SFNNTLLIFAILANFTLV--IVQVIDKFLFKKCTSTKHLSLNYSFVILL 253


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 172 LSVLQLFVVTEPLL--LLTMRHFTKKIVWNKHVNLNNT 65
           +S+L + +   P+   +L  RH T+ I+ N H+NL+ T
Sbjct: 210 ISILYMTIPCVPIYCAILYFRHNTRVILNNPHINLSPT 247


>Z81506-1|CAB04128.1|  555|Caenorhabditis elegans Hypothetical
           protein F16H6.1 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 29  RNALEAC*QNCKSIVQIHVFVPNNF 103
           ++A  AC Q C ++V IH    NNF
Sbjct: 187 QDAQSACQQECGNLVSIHSDEENNF 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,893,251
Number of Sequences: 27780
Number of extensions: 119102
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)