Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20161
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   1.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   9.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    20   9.4  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 111 LLKKLFGTNT*I*TILLQF 55
           LLKKL+G N+ I  +L++F
Sbjct: 123 LLKKLYGGNSTIIFLLIRF 141


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 204 NKNLLITXENICLYYSYLLLPNH 136
           ++N+ +  EN+ + Y    LP H
Sbjct: 34  SRNITMVLENLLMNYENNQLPTH 56


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 78  FTCLFQTIFLV 110
           F CL  TIFL+
Sbjct: 124 FNCLSDTIFLI 134


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 78  FTCLFQTIFLV 110
           F CL  TIFL+
Sbjct: 124 FNCLSDTIFLI 134


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 78  FTCLFQTIFLV 110
           F CL  TIFL+
Sbjct: 124 FNCLSDTIFLI 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,438
Number of Sequences: 438
Number of extensions: 1355
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)